gnu: Add r-motiv.

* gnu/packages/bioconductor.scm (r-motiv): New variable.
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Ricardo Wurmus 2019-03-29 14:59:23 +01:00
parent 051e8e1a5b
commit 229f97c37a
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@ -3209,3 +3209,34 @@ fitting a three-component normal mixture on z-scores.")
"rGADEM is an efficient de novo motif discovery tool for large-scale
genomic sequence data.")
(license license:artistic2.0)))
(define-public r-motiv
(package
(name "r-motiv")
(version "1.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MotIV" version))
(sha256
(base32
"1qrpydwc5bn8f0843qkyhw6920xk8kvq452ird0ij96g6faiv9a8"))))
(properties `((upstream-name . "MotIV")))
(build-system r-build-system)
(inputs
`(("gsl" ,gsl)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-rgadem" ,r-rgadem)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/MotIV/")
(synopsis "Motif identification and validation")
(description
"This package is used for the identification and validation of sequence
motifs. It makes use of STAMP for comparing a set of motifs to a given
database (e.g. JASPAR). It can also be used to visualize motifs, motif
distributions, modules and filter motifs.")
(license license:gpl2)))