gnu: Add r-somaticsignatures.

* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
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Ricardo Wurmus 2019-03-29 20:28:38 +01:00
parent 398c4a9347
commit 28098414d0
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@ -3685,3 +3685,40 @@ dimensional data which are represented as tracks describe different features
from different aspects. This package provides high flexibility to arrange
genomic categories and to add self-defined graphics in the plot.")
(license license:expat)))
(define-public r-somaticsignatures
(package
(name "r-somaticsignatures")
(version "2.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "SomaticSignatures" version))
(sha256
(base32
"013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02"))))
(properties
`((upstream-name . "SomaticSignatures")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggbio" ,r-ggbio)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-nmf" ,r-nmf)
("r-pcamethods" ,r-pcamethods)
("r-proxy" ,r-proxy)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://github.com/juliangehring/SomaticSignatures")
(synopsis "Somatic signatures")
(description
"This package identifies mutational signatures of @dfn{single nucleotide
variants} (SNVs). It provides a infrastructure related to the methodology
described in Nik-Zainal (2012, Cell), with flexibility in the matrix
decomposition algorithms.")
(license license:expat)))