gnu: Add r-somaticsignatures.
* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
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@ -3685,3 +3685,40 @@ dimensional data which are represented as tracks describe different features
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from different aspects. This package provides high flexibility to arrange
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from different aspects. This package provides high flexibility to arrange
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genomic categories and to add self-defined graphics in the plot.")
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genomic categories and to add self-defined graphics in the plot.")
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(license license:expat)))
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(license license:expat)))
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(define-public r-somaticsignatures
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(package
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(name "r-somaticsignatures")
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(version "2.18.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "SomaticSignatures" version))
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(sha256
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(base32
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"013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02"))))
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(properties
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`((upstream-name . "SomaticSignatures")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biostrings" ,r-biostrings)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-ggbio" ,r-ggbio)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-nmf" ,r-nmf)
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("r-pcamethods" ,r-pcamethods)
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("r-proxy" ,r-proxy)
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("r-reshape2" ,r-reshape2)
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("r-s4vectors" ,r-s4vectors)
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("r-variantannotation" ,r-variantannotation)))
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(home-page "https://github.com/juliangehring/SomaticSignatures")
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(synopsis "Somatic signatures")
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(description
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"This package identifies mutational signatures of @dfn{single nucleotide
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variants} (SNVs). It provides a infrastructure related to the methodology
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described in Nik-Zainal (2012, Cell), with flexibility in the matrix
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decomposition algorithms.")
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(license license:expat)))
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