gnu: Add r-somaticsignatures.

* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable.
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Ricardo Wurmus 2019-03-29 20:28:38 +01:00
parent 398c4a9347
commit 28098414d0
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@ -3685,3 +3685,40 @@ dimensional data which are represented as tracks describe different features
from different aspects. This package provides high flexibility to arrange from different aspects. This package provides high flexibility to arrange
genomic categories and to add self-defined graphics in the plot.") genomic categories and to add self-defined graphics in the plot.")
(license license:expat))) (license license:expat)))
(define-public r-somaticsignatures
(package
(name "r-somaticsignatures")
(version "2.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "SomaticSignatures" version))
(sha256
(base32
"013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02"))))
(properties
`((upstream-name . "SomaticSignatures")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggbio" ,r-ggbio)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-nmf" ,r-nmf)
("r-pcamethods" ,r-pcamethods)
("r-proxy" ,r-proxy)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://github.com/juliangehring/SomaticSignatures")
(synopsis "Somatic signatures")
(description
"This package identifies mutational signatures of @dfn{single nucleotide
variants} (SNVs). It provides a infrastructure related to the methodology
described in Nik-Zainal (2012, Cell), with flexibility in the matrix
decomposition algorithms.")
(license license:expat)))