gnu: Add r-quantro.

* gnu/packages/bioconductor.scm (r-quantro): New variable.
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Ricardo Wurmus 2019-03-29 22:30:39 +01:00
parent 8d1990d495
commit 59cf26292f
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@ -3848,3 +3848,34 @@ generating high resolution journal figures.")
GeneChip expression data and reproducibility analysis of human whole genome
chips with the MAQC reference datasets.")
(license license:artistic2.0)))
(define-public r-quantro
(package
(name "r-quantro")
(version "1.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "quantro" version))
(sha256
(base32
"1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-iterators" ,r-iterators)
("r-minfi" ,r-minfi)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "https://bioconductor.org/packages/quantro/")
(synopsis "Test for when to use quantile normalization")
(description
"This package provides a data-driven test for the assumptions of quantile
normalization using raw data such as objects that inherit eSets (e.g.
ExpressionSet, MethylSet). Group level information about each sample (such as
Tumor / Normal status) must also be provided because the test assesses if
there are global differences in the distributions between the user-defined
groups.")
(license license:gpl3+)))