gnu: blast+: Update to 2.7.1.

* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
This commit is contained in:
Ricardo Wurmus 2019-03-08 22:59:21 +01:00
parent f87dcb4d75
commit 8b6acb1f20
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
3 changed files with 3 additions and 19 deletions

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@ -670,7 +670,6 @@ dist_patch_DATA = \
%D%/packages/patches/beignet-correct-file-names.patch \
%D%/packages/patches/biber-fix-encoding-write.patch \
%D%/packages/patches/binutils-loongson-workaround.patch \
%D%/packages/patches/blast+-fix-makefile.patch \
%D%/packages/patches/boost-fix-icu-build.patch \
%D%/packages/patches/byobu-writable-status.patch \
%D%/packages/patches/calibre-no-updates-dialog.patch \

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@ -1092,7 +1092,7 @@ package provides command line tools using the Bio++ library.")
(define-public blast+
(package
(name "blast+")
(version "2.6.0")
(version "2.7.1")
(source (origin
(method url-fetch)
(uri (string-append
@ -1100,8 +1100,7 @@ package provides command line tools using the Bio++ library.")
version "/ncbi-blast-" version "+-src.tar.gz"))
(sha256
(base32
"15n937pw5aqmyfjb6l387d18grqbb96l63d5xj4l7yyh0zbf2405"))
(patches (search-patches "blast+-fix-makefile.patch"))
"1jlq0afxxgczpp35k6mxh8mn4jzq7vqcnaixk166sfj10wq8v9qh"))
(modules '((guix build utils)))
(snippet
'(begin
@ -1209,6 +1208,7 @@ package provides command line tools using the Bio++ library.")
"include")) ; 33 MB
(inputs
`(("bzip2" ,bzip2)
("lmdb" ,lmdb)
("zlib" ,zlib)
("pcre" ,pcre)
("perl" ,perl)

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@ -1,15 +0,0 @@
Without this patch, the 'make install' attempts to 'install' a directory, which causes an error.
diff --git a/c++/src/build-system/Makefile.in.top b/c++/src/build-system/Makefile.in.top
index 1abe44f..d6000b3 100644
--- a/c++/src/build-system/Makefile.in.top
+++ b/c++/src/build-system/Makefile.in.top
@@ -51,7 +51,7 @@ install-toolkit:
done
cd $(includedir0) && find * -name CVS -prune -o -print |\
cpio -pd $(pincludedir)
- $(INSTALL) -m 644 $(incdir)/* $(pincludedir)
+ cp -R $(incdir)/* $(pincludedir)
## set up appropriate build and status directories somewhere under $(libdir)?
install-gbench: