gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases.
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools, plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'. * gnu/packages/check.scm (catch-framework): Likewise. * gnu/packages/code.scm (global): Likewise. * gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools): Likewise. * gnu/packages/engineering.scm (fastcap, fasthenry): Likewise. * gnu/packages/gnuzilla.scm (nss): Likewise. * gnu/packages/guile.scm (guile-minikanren): Likewise. * gnu/packages/java.scm (swt): Likewise. * gnu/packages/make-bootstrap.scm (%static-binaries): Likewise. * gnu/packages/maths.scm (lpsolve): Likewise. * gnu/packages/mp3.scm (mpc123): Likewise. * gnu/packages/ninja.scm (ninja): Likewise. * gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise. * gnu/packages/screen.scm (dtach): Likewise. * gnu/packages/synergy.scm (synergy): Likewise. * gnu/packages/textutils.scm (utf8proc): Likewise. * gnu/packages/version-control.scm (git-test-sequence): Likewise. * gnu/packages/wicd.scm (wicd): Likewise.
This commit is contained in:
Ludovic Courtès
parent
4cc2ed98cf
commit
96c4621056
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@ -228,9 +228,8 @@ computational cluster.")
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'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
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(mkdir-p bin)
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(for-each (lambda (file)
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(copy-file file (string-append bin (basename file))))
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(install-file file bin))
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(find-files "bin" ".*"))))
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%standard-phases)))))
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(home-page "https://github.com/arq5x/bedtools2")
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@ -554,9 +553,8 @@ confidence to have in an alignment.")
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'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
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(mkdir-p bin)
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(for-each (lambda (file)
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(copy-file file (string-append bin file)))
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(install-file file bin))
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(find-files "." "bowtie2.*"))))
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(alist-replace
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'check
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@ -606,9 +604,9 @@ gapped, local, and paired-end alignment modes.")
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(mkdir-p bin)
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(mkdir-p doc)
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(mkdir-p man)
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(copy-file "bwa" (string-append bin "/bwa"))
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(copy-file "README.md" (string-append doc "/README.md"))
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(copy-file "bwa.1" (string-append man "/bwa.1"))))
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(install-file "bwa" bin)
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(install-file "README.md" doc)
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(install-file "bwa.1" man)))
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;; no "configure" script
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(alist-delete 'configure %standard-phases))))
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(inputs `(("zlib" ,zlib)))
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@ -1264,14 +1262,12 @@ estimates transcript expression.")
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(alist-replace
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'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
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(mkdir-p bin)
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(for-each
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(lambda (file)
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(copy-file file (string-append bin file)))
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(find-files
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"."
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"hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$"))))
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(let ((bin (string-append (assoc-ref outputs "out") "/bi/")))
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(for-each (lambda (file)
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(install-file file bin))
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(find-files
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"."
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"hisat(-(build|align|inspect)(-(s|l)(-debug)*)*)*$"))))
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(alist-delete 'configure %standard-phases)))))
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(native-inputs
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`(("unzip" ,unzip)))
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@ -1989,17 +1985,14 @@ distribution, coverage uniformity, strand specificity, etc.")
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'install 'install-library
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((lib (string-append (assoc-ref outputs "out") "/lib")))
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(mkdir-p lib)
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(copy-file "libbam.a" (string-append lib "/libbam.a"))))
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(install-file "libbam.a" lib)))
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(alist-cons-after
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'install 'install-headers
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((include (string-append (assoc-ref outputs "out")
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"/include/samtools/")))
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(mkdir-p include)
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(for-each (lambda (file)
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(copy-file file (string-append include
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(basename file))))
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(install-file file include))
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(scandir "." (lambda (name) (string-match "\\.h$" name))))
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#t))
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(alist-delete 'configure %standard-phases))))))
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@ -2254,8 +2247,7 @@ accessed/downloaded on demand across HTTP.")
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out")
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"/bin/")))
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(mkdir-p bin)
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(copy-file "plink" (string-append bin "plink"))
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(install-file "plink" bin)
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#t))))))
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(inputs
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`(("zlib" ,zlib)
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@ -2477,8 +2469,7 @@ bioinformatics file formats, sequence alignment, and more.")
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'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
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(mkdir-p bin)
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(copy-file "STAR" (string-append bin "STAR"))))
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(install-file "STAR" bin)))
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(alist-delete
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'configure %standard-phases)))))
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(native-inputs
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@ -136,10 +136,9 @@ supervised tests.")
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,version)))
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(begin
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(for-each mkdir-p (list incdir docdir))
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(copy-file (string-append source
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(install-file (string-append source
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"/single_include/catch.hpp")
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(string-append incdir
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"/catch.hpp"))
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incdir)
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(copy-recursively (string-append source "/docs")
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docdir))))))
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(home-page "http://catch-lib.net/")
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@ -117,9 +117,8 @@ highlighting your own code that seemed comprehensible when you wrote it.")
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(let* ((out (assoc-ref outputs "out"))
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(data (string-append out "/share/gtags"))
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(lisp (string-append out "/share/emacs/site-lisp")))
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(mkdir-p lisp)
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(copy-file (string-append data "/gtags.el")
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(string-append lisp "/gtags.el"))
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(install-file (string-append data "/gtags.el")
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lisp)
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(delete-file (string-append data "/gtags.el"))
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#t))
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%standard-phases)))
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@ -406,9 +406,9 @@ operations.")
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(lisp-dir (string-append %output "/share/emacs/site-lisp")))
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(setenv "PATH" PATH)
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(system* tar "xvf" source)
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(mkdir-p lisp-dir)
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(copy-file (string-append ,name "-" ,version "/magit-svn.el")
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(string-append lisp-dir "/magit-svn.el"))
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(install-file (string-append ,name "-" ,version "/magit-svn.el")
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lisp-dir)
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(with-directory-excursion lisp-dir
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(parameterize ((%emacs emacs))
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@ -462,18 +462,14 @@ support for Git-SVN.")
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out "/share/doc/haskell-mode-" ,version))
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(info (string-append out "/share/info")))
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(define (copy-to-dir dir files)
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(mkdir-p dir)
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(for-each
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(lambda (f)
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(copy-file f (string-append dir "/" (basename f))))
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files))
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(for-each (lambda (f)
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(install-file f dir))
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files))
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(with-directory-excursion "doc"
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(unless (zero? (system* "makeinfo" "haskell-mode.texi"))
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(error "makeinfo failed"))
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(mkdir-p info)
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(copy-file "haskell-mode.info"
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(string-append info "/haskell-mode.info")))
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(install-file "haskell-mode.info" info))
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(copy-to-dir doc '("CONTRIBUTING.md" "NEWS" "README.md"))
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(copy-to-dir el-dir (find-files "." "\\.elc?"))
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;; these are now distributed with emacs
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@ -876,11 +872,9 @@ single buffer.")
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((target (string-append (assoc-ref outputs "out")
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"/share/emacs/site-lisp/")))
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(mkdir-p target)
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(for-each
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(lambda (file)
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(copy-file file (string-append target (basename file))))
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(find-files "../lisp" "^(pdf|tab).*\\.elc?"))
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(for-each (lambda (file)
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(install-file file target))
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(find-files "../lisp" "^(pdf|tab).*\\.elc?"))
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(emacs-byte-compile-directory target)
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(emacs-generate-autoloads "pdf-tools" target)))))))
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(native-inputs `(("autoconf" ,autoconf)
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|
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@ -300,11 +300,9 @@ optimizer; and it can produce photorealistic and design review images.")
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(doc (string-append data "/doc/" ,name "-" ,version))
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(examples (string-append doc "/examples")))
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(with-directory-excursion "bin"
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(mkdir-p bin)
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(for-each
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(lambda (f)
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(copy-file f (string-append bin "/" (basename f))))
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(find-files "." ".*")))
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(for-each (lambda (f)
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(install-file f bin))
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(find-files "." ".*")))
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(copy-recursively "doc" doc)
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(copy-recursively "examples" examples)
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#t))))))
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@ -350,11 +348,9 @@ multipole-accelerated algorithm.")
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(doc (string-append data "/doc/" ,name "-" ,version))
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(examples (string-append doc "/examples")))
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(with-directory-excursion "bin"
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(mkdir-p bin)
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(for-each
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(lambda (f)
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(copy-file f (string-append bin "/" (basename f))))
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(find-files "." ".*")))
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(for-each (lambda (f)
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(install-file f bin))
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(find-files "." ".*")))
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(copy-recursively "doc" doc)
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(copy-recursively "examples" examples)
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#t))))))
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@ -190,14 +190,12 @@ in the Mozilla clients.")
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(obj (match (scandir "dist" (cut string-suffix? "OBJ" <>))
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((obj) (string-append "dist/" obj)))))
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;; Install nss-config to $out/bin.
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(mkdir-p (string-append out "/bin"))
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(copy-file (string-append obj "/bin/nss-config")
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(string-append out "/bin/nss-config"))
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(install-file (string-append obj "/bin/nss-config")
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(string-append out "/bin"))
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(delete-file (string-append obj "/bin/nss-config"))
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;; Install nss.pc to $out/lib/pkgconfig.
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(mkdir-p (string-append out "/lib/pkgconfig"))
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(copy-file (string-append obj "/lib/pkgconfig/nss.pc")
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(string-append out "/lib/pkgconfig/nss.pc"))
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(install-file (string-append obj "/lib/pkgconfig/nss.pc")
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(string-append out "/lib/pkgconfig"))
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(delete-file (string-append obj "/lib/pkgconfig/nss.pc"))
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(rmdir (string-append obj "/lib/pkgconfig"))
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;; Install other files.
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@ -452,7 +452,7 @@ http:://json.org specification. These are the main features:
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scm-files)
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;; Also copy over the README.
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(copy-file "README.org" (string-append doc "/README.org"))
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(install-file "README.org" doc)
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#t))))
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(inputs
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`(("guile" ,guile-2.0)))
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@ -102,8 +102,8 @@
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((java (string-append (assoc-ref outputs "out")
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"/share/java")))
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(mkdir-p java)
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(copy-file "swt.jar" (string-append java "/swt.jar"))) #t)
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(install-file "swt.jar" java)
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#t))
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(alist-delete 'configure %standard-phases))))))
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(inputs
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`(("xulrunner" ,icecat)
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|
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|
@ -253,10 +253,8 @@ for `sh' in $PATH, and without nscd, and with static NSS modules."
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;; But of course, there are exceptions to this rule.
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(let ((grep (assoc-ref %build-inputs "grep")))
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(copy-file (string-append grep "/bin/fgrep")
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(string-append bin "/fgrep"))
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(copy-file (string-append grep "/bin/egrep")
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(string-append bin "/egrep")))
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(install-file (string-append grep "/bin/fgrep") bin)
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(install-file (string-append grep "/bin/egrep") bin))
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;; Clear references to the store path.
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(for-each remove-store-references
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@ -1828,21 +1828,17 @@ specifications.")
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(string-append lib "/liblpsolve55.a"))
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(copy-file "lpsolve55/bin/ux64/liblpsolve55.so"
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(string-append lib "/liblpsolve55.so"))
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(mkdir-p bin)
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(copy-file "lp_solve/bin/ux64/lp_solve"
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(string-append bin "/lp_solve"))
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(mkdir-p include)
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(install-file "lp_solve/bin/ux64/lp_solve" bin)
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;; Install a subset of the header files as on Debian
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;; (plus lp_bit.h, which matches the regular expression).
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(for-each
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(lambda (name)
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(copy-file name (string-append include "/" name)))
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(find-files "." "lp_[HMSa-z].*\\.h$"))
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(for-each (lambda (name)
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(install-file name include))
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(find-files "." "lp_[HMSa-z].*\\.h$"))
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(with-directory-excursion "shared"
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(for-each
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(lambda (name)
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(copy-file name (string-append include "/" name)))
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(find-files "." "\\.h$")))
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(for-each (lambda (name)
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(install-file name include))
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(find-files "." "\\.h$")))
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#t))))))
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(home-page "http://lpsolve.sourceforge.net/")
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(synopsis "Mixed integer linear programming (MILP) solver")
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@ -435,7 +435,7 @@ format.")
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin")))
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(mkdir-p bin)
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(copy-file "mpc123" (string-append bin "/mpc123"))))
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(install-file "mpc123" bin)))
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%standard-phases))
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#:tests? #f))
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@ -66,11 +66,8 @@
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(let* ((out (assoc-ref outputs "out"))
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(bin (string-append out "/bin"))
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(doc (string-append out "/share/doc/ninja")))
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(mkdir-p bin)
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(copy-file "ninja" (string-append bin "/ninja"))
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(mkdir-p doc)
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(copy-file "doc/manual.asciidoc"
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(string-append doc "/manual.asciidoc"))
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(install-file "ninja" bin)
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(install-file "doc/manual.asciidoc" doc)
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#t))))))
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(home-page "http://martine.github.io/ninja/")
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(synopsis "Small build system")
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@ -2784,7 +2784,7 @@ association studies (GWAS) on extremely large data sets.")
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(tgt-dir (string-append html "/" dir)))
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(unless (equal? "." dir)
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(mkdir-p tgt-dir))
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(copy-file file (string-append html "/" file))))
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(install-file file html)))
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(find-files "." ".*"))))))
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,phases)))))))
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@ -2828,7 +2828,7 @@ association studies (GWAS) on extremely large data sets.")
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(for-each
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(lambda (dir tgt)
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(map (lambda (file)
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(copy-file file (string-append tgt "/" (basename file))))
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(install-file file tgt))
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(find-files dir ".*")))
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(list "docs" "htmldoc" "examples")
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(list doc html-doc examples))))
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@ -3140,9 +3140,7 @@ atlas_libs = openblas
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(for-each (lambda (file)
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(let* ((dir (dirname file))
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(tgt-dir (string-append html "/" dir)))
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(unless (equal? "." dir)
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(mkdir-p tgt-dir))
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(copy-file file (string-append html "/" file))))
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(install-file file html)))
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(find-files "." ".*"))))))
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;; Tests can only be run after the library has been installed and not
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;; within the source directory.
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@ -79,8 +79,7 @@ view to show two terminals at once.")
|
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'install
|
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
|
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(mkdir-p (string-append out "/bin"))
|
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(copy-file "dtach" (string-append out "/bin/dtach"))))
|
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(install-file "dtach" (string-append out "/bin"))))
|
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%standard-phases)
|
||||
;; No check target.
|
||||
#:tests? #f))
|
||||
|
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|
|||
|
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@ -92,19 +92,15 @@
|
|||
(ex (string-append out "/share/doc/synergy-"
|
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,version "/examples")))
|
||||
(begin
|
||||
(mkdir-p bin)
|
||||
(for-each
|
||||
(lambda (f)
|
||||
(copy-file (string-append srcdir "/bin/" f)
|
||||
(string-append bin "/" f)))
|
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(install-file (string-append srcdir "/bin/" f) bin))
|
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'("synergyc" "synergys" "synergyd"
|
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"usynergy" "syntool"))
|
||||
;; Install example configuration files
|
||||
(mkdir-p ex)
|
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(for-each
|
||||
(lambda (e)
|
||||
(copy-file (string-append srcdir "/doc/" e)
|
||||
(string-append ex "/" e)))
|
||||
(install-file (string-append srcdir "/doc/" e) ex))
|
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'("synergy.conf.example"
|
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"synergy.conf.example-advanced"
|
||||
"synergy.conf.example-basic")))))
|
||||
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|
|
@ -111,11 +111,9 @@ libenca and several charset conversion libraries and tools.")
|
|||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(let ((lib (string-append (assoc-ref outputs "out") "/lib/"))
|
||||
(include (string-append (assoc-ref outputs "out") "/include/")))
|
||||
(mkdir-p lib)
|
||||
(mkdir-p include)
|
||||
(copy-file "utf8proc.h" (string-append include "utf8proc.h"))
|
||||
(install-file "utf8proc.h" include)
|
||||
(for-each (lambda (file)
|
||||
(copy-file file (string-append lib (basename file))))
|
||||
(install-file file lib))
|
||||
'("libutf8proc.a" "libutf8proc.so"))))
|
||||
;; no configure script
|
||||
(alist-delete 'configure %standard-phases))))
|
||||
|
|
|
|||
|
|
@ -432,11 +432,9 @@ lot easier.")
|
|||
(output (assoc-ref %outputs "out"))
|
||||
(bindir (string-append output "/bin"))
|
||||
(script "git-test-sequence"))
|
||||
(begin
|
||||
(mkdir-p bindir)
|
||||
(copy-file (string-append source "/" script)
|
||||
(string-append bindir "/" script))
|
||||
#t)))))
|
||||
(install-file (string-append source "/" script)
|
||||
bindir)
|
||||
#t))))
|
||||
(home-page "http://dustin.sallings.org/2010/03/28/git-test-sequence.html")
|
||||
(synopsis "Run a command over a sequence of commits")
|
||||
(description
|
||||
|
|
|
|||
|
|
@ -174,16 +174,13 @@
|
|||
;; directory.
|
||||
(let ((dest-dir (string-append out "/etc/wicd"))
|
||||
(name "dhclient.conf.template.default"))
|
||||
(mkdir-p dest-dir)
|
||||
(copy-file (string-append "other/" name)
|
||||
(string-append dest-dir "/" name)))
|
||||
(install-file (string-append "other/" name) dest-dir))
|
||||
|
||||
;; Copy index.theme from hicolor-icon-theme. This is needed to
|
||||
;; allow wicd-gtk to find its icons.
|
||||
(let ((hicolor (assoc-ref inputs "hicolor-icon-theme"))
|
||||
(name "/share/icons/hicolor/index.theme"))
|
||||
(copy-file (string-append hicolor name)
|
||||
(string-append out name)))
|
||||
(install-file (string-append hicolor name) out))
|
||||
#t))
|
||||
%standard-phases))))
|
||||
(synopsis "Network connection manager")
|
||||
|
|
|
|||
Loading…
Reference in New Issue