gnu: Add r-abaenrichment.

* gnu/packages/bioconductor.scm (r-abaenrichment): New variable.
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Ricardo Wurmus 2019-03-29 17:43:57 +01:00
parent 3972cfce6a
commit 9bf4bb19c9
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@ -3430,3 +3430,33 @@ the annotations, and options to take gene-length or spatial clustering of
genes into account. It is also possible to provide custom gene coordinates,
annotations and ontologies.")
(license license:gpl2+)))
(define-public r-abaenrichment
(package
(name "r-abaenrichment")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ABAEnrichment" version))
(sha256
(base32
"0bvanqmg1smyckh16m2qn7d68zq4j7n74sgsnbgms5jngbp9158v"))))
(properties `((upstream-name . "ABAEnrichment")))
(build-system r-build-system)
(propagated-inputs
`(("r-abadata" ,r-abadata)
("r-data-table" ,r-data-table)
("r-gofuncr" ,r-gofuncr)
("r-gplots" ,r-gplots)
("r-gtools" ,r-gtools)
("r-rcpp" ,r-rcpp)))
(home-page "https://bioconductor.org/packages/ABAEnrichment/")
(synopsis "Gene expression enrichment in human brain regions")
(description
"The package ABAEnrichment is designed to test for enrichment of user
defined candidate genes in the set of expressed genes in different human brain
regions. The core function @code{aba_enrich} integrates the expression of the
candidate gene set (averaged across donors) and the structural information of
the brain using an ontology, both provided by the Allen Brain Atlas project.")
(license license:gpl2+)))