gnu: Add R.
* gnu/packages/statistics.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it * guix/download.scm (%mirrors): Add CRAN mirrors.
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Ricardo Wurmus
parent
d3d656c5fb
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cb7e486797
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@ -260,6 +260,7 @@ GNU_SYSTEM_MODULES = \
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gnu/packages/socat.scm \
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gnu/packages/ssh.scm \
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gnu/packages/stalonetray.scm \
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gnu/packages/statistics.scm \
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gnu/packages/swig.scm \
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gnu/packages/sxiv.scm \
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gnu/packages/synergy.scm \
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@ -0,0 +1,108 @@
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;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages statistics)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix utils)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages icu4c)
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#:use-module (gnu packages image)
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#:use-module (gnu packages java)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages pcre)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages texlive)
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#:use-module (gnu packages texinfo)
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#:use-module (gnu packages which)
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#:use-module (gnu packages xorg))
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(define-public r
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(package
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(name "r")
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(version "3.1.2")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://cran/src/base/R-"
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(version-prefix version 1) "/R-"
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version ".tar.gz"))
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(sha256
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(base32
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"0ypsm11c7n49pgh2ricyhhpfhas3famscdazzdp2zq70rapm1ldw"))))
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(build-system gnu-build-system)
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(arguments
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`(#:phases
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(alist-cons-before
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'check 'set-timezone
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;; Some tests require the timezone to be set.
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(lambda _ (setenv "TZ" "UTC"))
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%standard-phases)
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#:configure-flags
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'("--with-blas"
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"--with-lapack"
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"--with-cairo"
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"--with-libpng"
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"--with-jpeglib"
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"--with-libtiff"
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"--with-ICU"
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"--enable-R-shlib"
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"--enable-BLAS-shlib"
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"--with-system-zlib"
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"--with-system-bzlib"
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"--with-system-pcre"
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"--with-system-tre"
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"--with-system-xz")))
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(native-inputs
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`(("bzip2" ,bzip2)
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("perl" ,perl)
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("pkg-config" ,pkg-config)
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("texlive" ,texlive) ; needed to make vignettes
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("texinfo" ,texinfo) ; for building HTML manuals
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("which" ,which) ; for tests/Examples/base-Ex.R
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("xz" ,xz)))
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(inputs
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`(("atlas" ,atlas) ; --with-blas
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("cairo" ,cairo)
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("gfortran" ,gfortran-4.8)
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("icu4c" ,icu4c)
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("icedtea6" ,icedtea6)
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("lapack" ,lapack)
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("libjpeg" ,libjpeg)
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("libpng" ,libpng)
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("libtiff" ,libtiff)
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("libxt" ,libxt)
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("pcre" ,pcre)
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("readline" ,readline)
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("zlib" ,zlib)))
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(home-page "http://www.r-project.org/")
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(synopsis "Environment for statistical computing and graphics")
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(description
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"R is a language and environment for statistical computing and graphics.
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It provides a variety of statistical techniques, such as linear and nonlinear
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modeling, classical statistical tests, time-series analysis, classification
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and clustering. It also provides robust support for producing
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publication-quality data plots. A large amount of 3rd-party packages are
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available, greatly increasing its breadth and scope.")
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(license license:gpl3+)))
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@ -164,6 +164,16 @@
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"ftp://ftp.nara.wide.ad.jp/pub/CPAN/"
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"http://mirrors.163.com/cpan/"
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"ftp://cpan.mirror.ac.za/")
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(cran
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;; Arbitrary mirrors from http://cran.r-project.org/mirrors.html
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;; This one automatically redirects to servers worldwide
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"http://cran.rstudio.com/"
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"http://cran.univ-lyon1.fr/"
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"http://cran.r-mirror.de/"
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"http://cran.ism.ac.jp/"
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"http://cran.stat.auckland.ac.nz/"
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"http://cran.mirror.ac.za/"
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"http://cran.csie.ntu.edu.tw/")
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(imagemagick
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;; from http://www.imagemagick.org/script/download.php
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;; (without mirrors that are unavailable or not up to date)
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