gnu: scotch: Update to 6.0.5a.

* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files.
* gnu/packages/patches/scotch-build-parallelism.patch,
gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (scotch): Update to 6.0.5a.
[source](patches): Adjust accordingly.
This commit is contained in:
Eric Bavier 2018-03-02 14:05:34 -06:00 committed by Eric Bavier
parent c2e76b7082
commit d98e9009a9
No known key found for this signature in database
GPG Key ID: FD73CAC719D32566
6 changed files with 93 additions and 17 deletions

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@ -1014,7 +1014,6 @@ dist_patch_DATA = \
%D%/packages/patches/psm-arch.patch \
%D%/packages/patches/psm-ldflags.patch \
%D%/packages/patches/psm-repro.patch \
%D%/packages/patches/pt-scotch-build-parallelism.patch \
%D%/packages/patches/pulseaudio-fix-mult-test.patch \
%D%/packages/patches/pulseaudio-longer-test-timeout.patch \
%D%/packages/patches/pycairo-wscript.patch \
@ -1086,6 +1085,9 @@ dist_patch_DATA = \
%D%/packages/patches/rxvt-unicode-escape-sequences.patch \
%D%/packages/patches/scheme48-tests.patch \
%D%/packages/patches/scotch-test-threading.patch \
%D%/packages/patches/scotch-build-parallelism.patch \
%D%/packages/patches/scotch-graph-diam-64.patch \
%D%/packages/patches/scotch-graph-induce-type-64.patch \
%D%/packages/patches/sdl-libx11-1.6.patch \
%D%/packages/patches/seq24-rename-mutex.patch \
%D%/packages/patches/shadow-CVE-2018-7169.patch \

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@ -2199,16 +2199,18 @@ implemented in ANSI C, and MPI for communications.")
(define-public scotch
(package
(name "scotch")
(version "6.0.4")
(version "6.0.5a")
(source
(origin
(method url-fetch)
(uri (string-append "https://gforge.inria.fr/frs/download.php/"
"latestfile/298/scotch_" version ".tar.gz"))
(sha256
(base32 "1ir088mvrqggyqdkx9qfynmiaffqbyih5qfl5mga2nrlm1qlsgzm"))
(base32 "0vsmgjz8qv80di3ljmc7hbdsizxxxwy2b9rgd2fl1mdc6dgbj8av"))
(patches (search-patches "scotch-test-threading.patch"
"pt-scotch-build-parallelism.patch"))))
"scotch-build-parallelism.patch"
"scotch-graph-induce-type-64.patch"
"scotch-graph-diam-64.patch"))))
(build-system gnu-build-system)
(inputs
`(("zlib" ,zlib)

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@ -1,13 +0,0 @@
Building with -j may cause the esmumps_main target to fail with a "no rule for
dependency libptesmumps.a" error. Fix the dependency name.
--- scotch_6.0.4/src/esmumps/Makefile 2012-12-01 08:29:29.000000000 -0600
+++ scotch_6.0.4/src/esmumps/Makefile 2015-06-15 17:29:23.279605734 -0500
@@ -160,6 +160,6 @@
order.h \
symbol.h \
esmumps.h \
- lib$(ESMUMPSLIB)$(LIB) \
+ libesmumps$(LIB) \
$(libdir)/lib$(SCOTCHLIB)$(LIB) \
$(libdir)/lib$(SCOTCHLIB)errexit$(LIB)

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@ -0,0 +1,39 @@
Fixes make with -j, otherwise scotch.h may not be generated by the time make
tries to compile library_graph_diam.o et al.
Reported upstream at
https://gforge.inria.fr/tracker/index.php?func=detail&aid=21651&group_id=248&atid=1081
diff --git a/src/libscotch/Makefile b/src/libscotch/Makefile
index 9898894..b0ee14c 100644
--- a/src/libscotch/Makefile
+++ b/src/libscotch/Makefile
@@ -2229,6 +2229,28 @@ library_graph_color_f$(OBJ) : library_graph_color_f.c \
common.h \
scotch.h
+library_graph_diam$(OBJ) : library_graph_diam.c \
+ module.h \
+ common.h \
+ graph.h \
+ scotch.h
+
+library_graph_diam_f$(OBJ) : library_graph_diam.c \
+ module.h \
+ common.h \
+ scotch.h
+
+library_graph_induce$(OBJ) : library_graph_diam.c \
+ module.h \
+ common.h \
+ graph.h \
+ scotch.h
+
+library_graph_induce_f$(OBJ) : library_graph_diam.c \
+ module.h \
+ common.h \
+ scotch.h
+
library_graph_io_chac$(OBJ) : library_graph_io_chac.c \
module.h \
common.h \

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@ -0,0 +1,27 @@
Fixes test_scotch_graph_diam test with -DINTSIZE64.
Reported upstream at
https://gforge.inria.fr/tracker/index.php?func=detail&aid=21650&group_id=248&atid=1081
--- scotch-6.0.5a/src/libscotch/library.h
+++ scotch-6.0.5a/src/libscotch/library.h
@@ -187,6 +187,7 @@ SCOTCH_Num SCOTCH_graphBase (SCOTCH_Graph * const, const SCO
int SCOTCH_graphCheck (const SCOTCH_Graph * const);
void SCOTCH_graphSize (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const);
void SCOTCH_graphData (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const);
+SCOTCH_Num SCOTCH_graphDiamPV (SCOTCH_Graph * const);
void SCOTCH_graphStat (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const);
int SCOTCH_graphCoarsen (const SCOTCH_Graph * const, const SCOTCH_Num, const double, const SCOTCH_Num, SCOTCH_Graph * const, SCOTCH_Num * const);
int SCOTCH_graphCoarsenMatch (const SCOTCH_Graph * const, SCOTCH_Num * const, const double, const SCOTCH_Num, SCOTCH_Num * const);
--- scotch-6.0.5a/src/libscotch/library_graph_diam.c
+++ scotch-6.0.5a/src/libscotch/library_graph_diam.c
@@ -72,8 +72,7 @@
SCOTCH_Num
SCOTCH_graphDiamPV (
-SCOTCH_Graph * const grafptr,
-const SCOTCH_Num baseval)
+SCOTCH_Graph * const grafptr)
{
return ((SCOTCH_Num) graphDiamPV ((Graph * const) grafptr));
}

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@ -0,0 +1,19 @@
Fixes return type of SCOTCH_graphInduceList and SCOTCH_graphInducePart
so that the definition matches with -DINTSIZE64.
Reported upstream at
https://gforge.inria.fr/tracker/index.php?func=detail&aid=21608&group_id=248&atid=1081
--- scotch_6.0.5a/src/libscotch/library.h.orig 2018-02-11 10:52:38.000000000 -0600
+++ scotch_6.0.5a/src/libscotch/library.h 2018-02-23 16:56:41.000000000 -0600
@@ -199,8 +199,8 @@
int SCOTCH_graphGeomSaveChac (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const);
int SCOTCH_graphGeomSaveMmkt (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const);
int SCOTCH_graphGeomSaveScot (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const);
-int SCOTCH_graphInduceList (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Graph * const);
-int SCOTCH_graphInducePart (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_GraphPart2 * const, const SCOTCH_GraphPart2, SCOTCH_Graph * const);
+SCOTCH_Num SCOTCH_graphInduceList (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Graph * const);
+SCOTCH_Num SCOTCH_graphInducePart (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_GraphPart2 * const, const SCOTCH_GraphPart2, SCOTCH_Graph * const);
int SCOTCH_graphMapInit (const SCOTCH_Graph * const, SCOTCH_Mapping * const, const SCOTCH_Arch * const, SCOTCH_Num * const);
void SCOTCH_graphMapExit (const SCOTCH_Graph * const, SCOTCH_Mapping * const);