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gnu: python-rpy2: Update to 2.9.0.

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* gnu/packages/python.scm (python-rpy2): Update to 2.9.0.
[arguments]: Run tests before install phase; add build phase "fix-tests".
[propagated-inputs]: Add python-jinja2 and python-pytz.
[inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
This commit is contained in:
Ricardo Wurmus 2017-08-31 18:20:19 +02:00
parent c92483bd63
commit deee5ddaf4
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1 changed files with 33 additions and 10 deletions
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@ -4396,33 +4396,56 @@ operators such as union, intersection, and difference.")
(define-public python-rpy2
(package
(name "python-rpy2")
(version "2.7.6")
(version "2.9.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rpy2" version))
(sha256
(base32
"0nhan2qvrw7b7gg5zddwa22kybdv3x1g26vkd7q8lvnkgzrs4dga"))))
"0bqihjrdqwj5r1h86shvfb1p5hfr4a6klv1v54bzfr9r144w3rni"))))
(build-system python-build-system)
(arguments
'(#:phases
'(#:modules ((ice-9 ftw)
(srfi srfi-1)
(srfi srfi-26)
(guix build utils)
(guix build python-build-system))
#:phases
(modify-phases %standard-phases
(delete 'check)
(add-after 'install 'check
;; Without this phase the test loader cannot find the directories, in
;; which it is supposed to look for test files.
(add-after 'unpack 'fix-tests
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "rpy/tests.py"
(("loader.discover\\(")
"loader.discover(rpy_root + '/' +"))
#t))
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
;; It's easier to run tests after install.
;; Make installed package available for running the tests
(add-installed-pythonpath inputs outputs)
(let ((cwd (getcwd)))
(setenv "PYTHONPATH"
(string-append cwd "/build/"
(find (cut string-prefix? "lib" <>)
(scandir (string-append cwd "/build")))
":"
(getenv "PYTHONPATH"))))
(zero? (system* "python" "-m" "rpy2.tests" "-v")))))))
(propagated-inputs
`(("python-six" ,python-six)))
`(("python-six" ,python-six)
("python-jinja2" ,python-jinja2)
("python-pytz" ,python-pytz)))
(inputs
`(("readline" ,readline)
("icu4c" ,icu4c)
("pcre" ,pcre)
("r-minimal" ,r-minimal)
("r-survival" ,r-survival)))
("r-survival" ,r-survival)
("r-ggplot2" ,r-ggplot2)
("r-rsqlite" ,r-rsqlite)
("r-dplyr" ,r-dplyr)
("r-dbplyr" ,r-dbplyr)
("python-numpy" ,python-numpy)))
(native-inputs
`(("zlib" ,zlib)))
(home-page "http://rpy.sourceforge.net/")