gnu: Add r-allelicimbalance.

* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable.
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Ricardo Wurmus 2019-03-29 18:07:17 +01:00
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commit f31e10f82e
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@ -3510,3 +3510,44 @@ other molecular biology information available as flat file database (plain
text files).")
;; Any version of the GPL.
(license (list license:gpl2+))))
(define-public r-allelicimbalance
(package
(name "r-allelicimbalance")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AllelicImbalance" version))
(sha256
(base32
"03524lj6aw9cskbpxzjmi9g708x6p94mf26yz4j941g1d0mc3z91"))))
(properties
`((upstream-name . "AllelicImbalance")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-gridextra" ,r-gridextra)
("r-gviz" ,r-gviz)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
("r-latticeextra" ,r-latticeextra)
("r-nlme" ,r-nlme)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-seqinr" ,r-seqinr)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://github.com/pappewaio/AllelicImbalance")
(synopsis "Investigate allele-specific expression")
(description
"This package provides a framework for allele-specific expression
investigation using RNA-seq data.")
(license license:gpl3)))