gnu: Add python-plastid.
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): New variables.
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@ -950,6 +950,46 @@ UCSC genome browser.")
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(native-inputs `(("python2-setuptools" ,python2-setuptools)
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,@(package-native-inputs base))))))
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(define-public python-plastid
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(package
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(name "python-plastid")
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(version "0.4.5")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "plastid" version))
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(sha256
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(base32
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"1nhxw8a5gn9as58i2ih52c5cjwj48ik418pzsjwph3s66mmy9yvq"))))
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(properties `((python2-variant . ,(delay python2-plastid))))
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(build-system python-build-system)
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(arguments
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;; Some test files are not included.
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`(#:tests? #f))
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(propagated-inputs
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`(("python-numpy" ,python-numpy)
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("python-scipy" ,python-scipy)
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("python-pandas" ,python-pandas)
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("python-pysam" ,python-pysam)
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("python-matplotlib" ,python-matplotlib)
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("python-biopython" ,python-biopython)
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("python-twobitreader" ,python-twobitreader)))
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(native-inputs
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`(("python-cython" ,python-cython)
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("python-nose" ,python-nose)))
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(home-page "https://github.com/joshuagryphon/plastid")
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(synopsis "Python library for genomic analysis")
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(description
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"plastid is a Python library for genomic analysis – in particular,
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high-throughput sequencing data – with an emphasis on simplicity.")
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(license license:bsd-3)))
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(define-public python2-plastid
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(let ((base (package-with-python2 (strip-python2-variant python-plastid))))
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(package
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(inherit base)
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(native-inputs `(("python2-setuptools" ,python2-setuptools)
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,@(package-native-inputs base))))))
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(define-public cd-hit
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(package
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(name "cd-hit")
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