df0bb509c2
download: Remove misbehaving kvin.lv mirror.
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It issues bogus redirections instead of returning 404.
* guix/download.scm (%mirrors): Remove kvin.lv from CPAN.
2020-03-09 16:01:17 +01:00
0ccc138517
gnu: Add spatialite-tools.
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* gnu/packages/geo.scm (spatialite-tools): New variable.
2020-03-09 15:21:46 +01:00
133de9ab38
gnu: Add readosm.
...
* gnu/packages/geo.scm (readosm): New variable.
2020-03-09 15:21:46 +01:00
e8906d86ee
gnu: spatialite-gui: Add missing input.
...
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
2020-03-09 15:21:46 +01:00
3cf0a5dc53
gnu: gdal: Update to 3.0.4.
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* gnu/packages/geo.scm (gdal): Update to 3.0.4.
2020-03-09 15:21:46 +01:00
9147d1216e
gnu: proj: Update to 6.3.1.
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* gnu/packages/geo.scm (proj): Update to 6.3.1.
2020-03-09 15:21:45 +01:00
4960c03d1d
gnu: Add perl-math-vecstat.
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* gnu/packages/perl.scm (perl-math-vecstat): New variable.
2020-03-09 15:18:13 +01:00
b4e1ca0675
gnu: python-semver: Fix build.
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* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib,
python-importlib-metadata, python-filelock, and python-six to native-inputs
in order to run the test suite.
2020-03-09 14:50:35 +01:00
c0f6446579
gnu: Fix build of python-velocyto.
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* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to
native-inputs to make the test suite run succesfully.
2020-03-09 14:34:41 +01:00
fb29d7d70c
gnu: Add vim-asyncrun.
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* gnu/packages/vim.scm (vim-asyncrun): New variable.
2020-03-09 14:45:38 +02:00
61daf2dbc9
gnu: Add nyancat.
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* gnu/packages/toys.scm (nyancat): New variable.
2020-03-09 14:31:25 +02:00
b6574660e3
gnu: Update python-statsmodels to 0.11.1.
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* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
2020-03-09 13:01:27 +01:00
6dfc981a98
gnu: Add sycamore.
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* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
2020-03-09 10:55:46 +01:00
698a34482a
gnu: emacs-sly: Update to 20200228.
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* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
2020-03-09 09:42:04 +01:00
478af02863
doc: Use an https link for Contributor Covenant.
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* doc/contributing.texi: Switch to https for the link to
contributor-covenant.org
Reported-By: guix-vits on IRC
2020-03-09 09:34:39 +01:00
c3b6d61df3
gnu: r-desolve: Update to 1.28.
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* gnu/packages/cran.scm (r-desolve): Update to 1.28.
2020-03-09 08:51:40 +01:00
103de43c67
gnu: r-umap: Update to 0.2.5.0.
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* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
2020-03-09 08:51:40 +01:00
ea20989d87
gnu: r-rcppannoy: Update to 0.0.16.
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* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
2020-03-09 08:51:40 +01:00
207ba868a3
gnu: r-quantmod: Update to 0.4-16.
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* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
2020-03-09 08:51:40 +01:00
bcbcd17d45
gnu: r-vcd: Update to 1.4-6.
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* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
2020-03-09 08:51:40 +01:00
fec7f576b4
gnu: r-ggrepel: Update to 0.8.2.
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* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
2020-03-09 08:51:36 +01:00
af96c1e0e4
services: cuirass: Allow passing extra command line options.
...
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.
* gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options
field.
(cuirass-shepherd-service): Pass the extra options to the shepherd servvices.
* doc/guix.texi (Continuous Integration): Document it.
2020-03-08 23:46:11 +00:00
d8ab68b929
services: guix-data-service: Allow passing extra options.
...
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.
* gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options
and extra-process-jobs-options to the record type.
(guix-data-service-shepherd-services): Handle these new configuration record
fields.
* doc/guix.texi (Guix Data Service): Document these new options.
2020-03-08 23:35:03 +00:00
67d21e2b08
gnu: guix-data-service: Update to 0.0.1-18.18eb9df.
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* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
2020-03-08 23:35:00 +00:00
94d57ba339
gnu: python-virtualenv: Update to 20.0.8.
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* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
[arguments]: Remove the now-redundant 'disable-failing-test phase.
[native-inputs]: Add python-setuptools and python-setuptools-scm.
[inputs]: Add python-{appdirs, distlib, filelock, six,
importlib-metadata}.
2020-03-09 00:20:49 +01:00
6e79208954
gnu: python-xyz: Add python-filelock.
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* gnu/packages/python-xyz.scm (python-filelock): New variable.
2020-03-09 00:20:47 +01:00
f2a6483084
gnu: python-xyz: Add python-distlib.
...
* gnu/packages/python-xyz.scm (python-distlib): New variable.
2020-03-09 00:20:46 +01:00
830eac9c27
gnu: ngless: Update to 1.1.0.
...
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
2020-03-08 23:37:09 +01:00
3f68f76eaf
gnu: Add jack-select.
...
* gnu/packages/music.scm (jack-select): New variable.
2020-03-08 23:13:11 +01:00
46a864e7c1
gnu: taxtastic: Update to 0.8.11.
...
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
2020-03-08 22:50:16 +01:00
d6d0e10b3d
gnu: guile-next: Revert to 3.0.0.
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Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.
* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
2020-03-08 22:15:54 +01:00
3d33ca27b2
gnu: Add perl-config-inifiles.
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* gnu/packages/perl.scm (perl-config-inifiles): New variable.
2020-03-08 21:50:44 +01:00
d0ca79e53d
gnu: Add perl-attribute-util.
...
* gnu/packages/perl.scm (perl-attribute-util): New variable.
2020-03-08 21:50:32 +01:00
30acf2f959
gnu: Add font-opendyslexic.
...
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
2020-03-08 22:42:33 +02:00
e5059c95aa
gnu: beep: Remove dependency on GCC 8.
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* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
2020-03-08 21:21:57 +01:00
1d91680c84
gnu: beep: Update to 1.4.9.
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* gnu/packages/terminals.scm (beep): Update to 1.4.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
f6713b55a1
services: certbot: Add server option.
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* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.
Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
9ef37e81d6
system: Export 'operating-system' missing fields.
...
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
1a30351bf3
gnu: guile-next: Update to 3.0.1.
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* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL.
2020-03-08 21:21:57 +01:00
9a2f99f42f
gexp: Default to current target.
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* guix/gexp.scm (lower-object): Set target argument to 'current by default and
look for the current target system at bind time if needed,
(gexp->file): ditto,
(gexp->script): ditto,
(lower-gexp): make sure lowered extensions are not cross-compiled.
* tests/gexp.scm: Add cross-compilation test-cases for gexp->script and
gexp->file with a target passed explicitely and with a default target.
2020-03-08 20:28:31 +01:00
5d52d10661
store: Add set-current-target procedure.
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* guix/store.scm (set-current-target): New exported procedure.
2020-03-08 20:28:31 +01:00
c32897b6e4
gnu: r-robust: Update to 0.5-0.0.
...
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
2020-03-08 16:02:04 +01:00
7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0.
...
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
2020-03-08 16:02:04 +01:00
dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
2020-03-08 16:02:04 +01:00
6434f9b634
gnu: Reword and extend descriptions for some KDE packages.
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* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
kontactinterface, kpimtextedit)[description]: Reword and extend.
(ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
(kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
2020-03-08 14:06:00 +01:00
1eb3b2b666
gnu: Add emacs-org-journal.
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* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
2020-03-08 11:19:16 +01:00
e2ca10a46f
gnu: python-umap-learn: Fix build.
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* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
run the test suite.
2020-03-08 10:20:22 +01:00
5fdc5b2d57
services: nfs: Run rpc.mountd in foreground.
...
Fixes <https://bugs.gnu.org/39708 >.
Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.
* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
2020-03-08 00:26:02 -05:00
be3908fa14
gnu: QEMU: Fix CVE-2020-8608.
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* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2020-03-07 16:37:25 -05:00
83ac7cb42b
gnu: brotli: Remove package
...
Same package is provided by google-brotli.
* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00
Tobias Geerinckx-Rice
Guillaume Le Vaillant
Roel Janssen
Efraim Flashner
Pierre Neidhardt
Jakub Kądziołka
Ricardo Wurmus
Christopher Baines
Ludovic Courtès
Vincent Legoll
Jack Hill
Brice Waegeneire
Mathieu Othacehe
Hartmut Goebel
Martin Becze
Maxim Cournoyer
Leo Famulari
Lars-Dominik Braun