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674 Commits

Author SHA1 Message Date
Ricardo Wurmus 2d6a7bca9e
gnu: r-biocpkgtools: Update to 1.4.6. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.4.6.
[propagated-inputs]: Add r-biocfilecache, r-rappdirs, r-rlang, and
r-tidyselect.
[native-inputs]: Add r-knitr.
 2020-03-19 10:06:27 +01:00
Ricardo Wurmus f7100edaf6
gnu: r-biosigner: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.2.
[native-inputs]: Remove r-rmarkdown, pandoc, and pandoc-citeproc.
 2020-03-19 10:06:27 +01:00
Tobias Geerinckx-Rice 486a080048
gnu: r-htqpcr: Update home page. 
* gnu/packages/bioconductor.scm (r-htqpcr)[home-page]: Use HTTPS link
to PDF paper.
 2020-03-17 23:09:24 +01:00
Ricardo Wurmus 6bd6097ed5
gnu: r-cicero: Update to 1.4.4. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0754fefb75
gnu: r-ggcyto: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
 2020-03-12 15:15:02 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
 2020-03-08 16:02:04 +01:00
Ricardo Wurmus 67133278ec
gnu: r-multiassayexperiment: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus bf3722f9db
gnu: r-depecher: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2.
[native-inputs]: Add r-knitr.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus a2512e436b
gnu: r-xcms: Update to 3.8.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
 2020-03-07 19:31:47 +01:00
Ricardo Wurmus f0aaa4482a
gnu: r-yamss: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
 2020-03-07 19:31:47 +01:00
Tobias Geerinckx-Rice b69c770305
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
 2020-03-02 21:46:27 +01:00
Ricardo Wurmus 5f5e0830f6
gnu: r-multiassayexperiment: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
 2020-03-01 23:38:33 +01:00
Ricardo Wurmus e766ba9a52
gnu: r-cicero: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
 2020-03-01 23:38:26 +01:00
Ricardo Wurmus 0a30342def
gnu: r-mlinterfaces: Update to 1.66.4. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
 2020-03-01 23:38:19 +01:00
Ricardo Wurmus aece78fe2f
gnu: r-biocneighbors: Update to 1.4.2. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
 2020-03-01 23:38:12 +01:00
Ricardo Wurmus 8351faae8a
gnu: r-chippeakanno: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
 2020-03-01 23:38:06 +01:00
Ricardo Wurmus 975cfe26e1
gnu: r-gkmsvm: Update to 0.80.0. 
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0.
[propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb,
r-iranges, r-rtracklayer, and r-s4vectors.
 2020-03-01 23:21:15 +01:00
Mădălin Ionel Patrașcu c51c0033d0
gnu: Add r-bsgenome-hsapiens-ncbi-grch38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-02-25 15:37:27 +01:00
Ricardo Wurmus 5bf7102265
gnu: r-genomicinteractions: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
 2020-02-22 23:39:27 +01:00
Ricardo Wurmus 5ea4f604ab
gnu: r-cicero: Update to 1.4.1. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1.
[propagated-inputs]: Add r-tidyr.
 2020-02-22 23:39:20 +01:00
Ricardo Wurmus 8017eb0ae8
gnu: r-ggm: Move to (gnu packages bioconductor). 
* gnu/packages/cran.scm (r-ggm): Move this variable from here...
* gnu/packages/bioconductor.scm (r-ggm): ...to here.
 2020-02-22 20:42:15 +01:00
Ricardo Wurmus d66901e2c3
gnu: r-depecher: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
 2020-02-19 23:00:13 +01:00
Ricardo Wurmus f607098f05
gnu: r-mixomics: Update to 6.10.8. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
 2020-02-19 23:00:08 +01:00
Ricardo Wurmus e01fa33baa
gnu: r-rsubread: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
 2020-02-19 23:00:02 +01:00
Ricardo Wurmus f86549cbb6
gnu: r-atacseqqc: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
 2020-02-19 22:59:56 +01:00
Ricardo Wurmus 776e98fe05
gnu: r-heatplus: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
 2020-02-19 22:59:49 +01:00
Ricardo Wurmus effbf7d986
gnu: r-biocsingular: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
 2020-02-19 22:59:44 +01:00
Ricardo Wurmus b7e86efd3b
gnu: r-inspect: Update to 1.16.3. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
 2020-02-19 22:59:35 +01:00
Ricardo Wurmus be1042b326
gnu: r-nmf: Update to 0.22.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.22.0.
[propagated-inputs]: Add r-biobase and r-biocmanager.
 2020-02-19 18:57:31 +01:00
Ricardo Wurmus 7c9d8a5d58
gnu: r-nmf: Move to (gnu packages bioconductor). 
* gnu/packages/statistics.scm (r-nmf): Move this variable from here...
* gnu/packages/bioconductor.scm (r-nmf): ...to here.
 2020-02-19 18:46:22 +01:00
Tobias Geerinckx-Rice c756328e66
gnu: r-lpsymphony: Use HTTPS home page. 
* gnu/packages/bioconductor.scm (r-lpsymphony)[home-page]: Use HTTPS.
 2020-02-11 07:10:31 +01:00
Tobias Geerinckx-Rice 5e1f2362c1
gnu: r-codedepends: Use HTTPS home page. 
* gnu/packages/bioconductor.scm (r-codedepends)[home-page]: Use HTTPS.
 2020-02-11 07:10:31 +01:00
Tobias Geerinckx-Rice 798ca8d08e
gnu: r-multiassayexperiment: Use HTTPS home page. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment)[home-page]: Use HTTPS.
 2020-02-11 07:10:29 +01:00
Roel Janssen a38bf7c843
gnu: Add r-deconstructsigs. 
* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-01-27 22:31:19 +01:00
Ricardo Wurmus 0dfaebfa2e
gnu: r-multiassayexperiment: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus c5d75df366
gnu: r-ropls: Update to 1.18.8. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus 062cbc4f2b
gnu: r-destiny: Update to 3.0.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
 2020-01-27 20:48:36 +01:00
Ricardo Wurmus fd6412cd2c
gnu: r-metap: Update to 1.3. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
 2020-01-27 16:33:27 +01:00
Vagrant Cascadian 5b98473a1f
gnu: r-biocset: Fix spelling of "ability". 
* gnu/packages/bioconductor (r-biocset)[description]: Fix typo.
 2020-01-24 02:38:13 -08:00
Tobias Geerinckx-Rice 99db6db7be
gnu: Use HTTPS for bioconductor.org. 
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked,
r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno,
r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise.
* gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
 2020-01-21 00:43:39 +01:00
Ricardo Wurmus d1ac643062
gnu: r-variancepartition: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 3f42bd81a5
gnu: r-ropls: Update to 1.18.6. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 99e2a24978
gnu: r-inspect: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 7a8fcdaccc
gnu: r-regioner: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus f8f181ae41
gnu: r-affycoretools: Update to 1.58.4. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus bd824de3ad
gnu: r-inspect: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
 2019-12-27 21:30:26 +01:00