diff --git a/keyboards/lily58/matrix.c b/keyboards/lily58/matrix.c
deleted file mode 100644
index 328d16c77..000000000
--- a/keyboards/lily58/matrix.c
+++ /dev/null
@@ -1,459 +0,0 @@
-/*
-Copyright 2012 Jun Wako <wakojun@gmail.com>
-
-This program is free software: you can redistribute it and/or modify
-it under the terms of the GNU General Public License as published by
-the Free Software Foundation, either version 2 of the License, or
-(at your option) any later version.
-
-This program is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-GNU General Public License for more details.
-
-You should have received a copy of the GNU General Public License
-along with this program.  If not, see <http://www.gnu.org/licenses/>.
-*/
-
-/*
- * scan matrix
- */
-#include <stdint.h>
-#include <stdbool.h>
-#include <avr/io.h>
-#include "wait.h"
-#include "print.h"
-#include "debug.h"
-#include "util.h"
-#include "matrix.h"
-#include "split_util.h"
-#include "pro_micro.h"
-#include "config.h"
-#include "timer.h"
-
-#ifdef USE_I2C
-#  include "i2c.h"
-#else // USE_SERIAL
-#  include "serial.h"
-#endif
-
-#ifndef DEBOUNCE
-#   define DEBOUNCE 5
-#endif
-
-#if (DEBOUNCE > 0)
-    static uint16_t debouncing_time;
-    static bool debouncing = false;
-#endif
-
-#if (MATRIX_COLS <= 8)
-#    define print_matrix_header()  print("\nr/c 01234567\n")
-#    define print_matrix_row(row)  print_bin_reverse8(matrix_get_row(row))
-#    define matrix_bitpop(i)       bitpop(matrix[i])
-#    define ROW_SHIFTER ((uint8_t)1)
-#else
-#    error "Currently only supports 8 COLS"
-#endif
-static matrix_row_t matrix_debouncing[MATRIX_ROWS];
-
-#define ERROR_DISCONNECT_COUNT 5
-
-#define ROWS_PER_HAND (MATRIX_ROWS/2)
-
-static uint8_t error_count = 0;
-
-static const uint8_t row_pins[MATRIX_ROWS] = MATRIX_ROW_PINS;
-static const uint8_t col_pins[MATRIX_COLS] = MATRIX_COL_PINS;
-
-/* matrix state(1:on, 0:off) */
-static matrix_row_t matrix[MATRIX_ROWS];
-static matrix_row_t matrix_debouncing[MATRIX_ROWS];
-
-#if (DIODE_DIRECTION == COL2ROW)
-    static void init_cols(void);
-    static bool read_cols_on_row(matrix_row_t current_matrix[], uint8_t current_row);
-    static void unselect_rows(void);
-    static void select_row(uint8_t row);
-    static void unselect_row(uint8_t row);
-#elif (DIODE_DIRECTION == ROW2COL)
-    static void init_rows(void);
-    static bool read_rows_on_col(matrix_row_t current_matrix[], uint8_t current_col);
-    static void unselect_cols(void);
-    static void unselect_col(uint8_t col);
-    static void select_col(uint8_t col);
-#endif
-
-__attribute__ ((weak))
-void matrix_init_kb(void) {
-    matrix_init_user();
-}
-
-__attribute__ ((weak))
-void matrix_scan_kb(void) {
-    matrix_scan_user();
-}
-
-__attribute__ ((weak))
-void matrix_init_user(void) {
-}
-
-__attribute__ ((weak))
-void matrix_scan_user(void) {
-}
-
-inline
-uint8_t matrix_rows(void)
-{
-    return MATRIX_ROWS;
-}
-
-inline
-uint8_t matrix_cols(void)
-{
-    return MATRIX_COLS;
-}
-
-void matrix_init(void)
-{
-    debug_enable = true;
-    debug_matrix = true;
-    debug_mouse = true;
-    // initialize row and col
-#if (DIODE_DIRECTION == COL2ROW)
-    unselect_rows();
-    init_cols();
-#elif (DIODE_DIRECTION == ROW2COL)
-    unselect_cols();
-    init_rows();
-#endif
-
-    TX_RX_LED_INIT;
-
-    // initialize matrix state: all keys off
-    for (uint8_t i=0; i < MATRIX_ROWS; i++) {
-        matrix[i] = 0;
-        matrix_debouncing[i] = 0;
-    }
-
-    matrix_init_quantum();
-
-}
-
-uint8_t _matrix_scan(void)
-{
-    int offset = isLeftHand ? 0 : (ROWS_PER_HAND);
-#if (DIODE_DIRECTION == COL2ROW)
-    // Set row, read cols
-    for (uint8_t current_row = 0; current_row < ROWS_PER_HAND; current_row++) {
-#       if (DEBOUNCE > 0)
-            bool matrix_changed = read_cols_on_row(matrix_debouncing+offset, current_row);
-
-            if (matrix_changed) {
-                debouncing = true;
-                debouncing_time = timer_read();
-            }
-
-#       else
-            read_cols_on_row(matrix+offset, current_row);
-#       endif
-
-    }
-
-#elif (DIODE_DIRECTION == ROW2COL)
-    // Set col, read rows
-    for (uint8_t current_col = 0; current_col < MATRIX_COLS; current_col++) {
-#       if (DEBOUNCE > 0)
-            bool matrix_changed = read_rows_on_col(matrix_debouncing+offset, current_col);
-            if (matrix_changed) {
-                debouncing = true;
-                debouncing_time = timer_read();
-            }
-#       else
-             read_rows_on_col(matrix+offset, current_col);
-#       endif
-
-    }
-#endif
-
-#   if (DEBOUNCE > 0)
-        if (debouncing && (timer_elapsed(debouncing_time) > DEBOUNCE)) {
-            for (uint8_t i = 0; i < ROWS_PER_HAND; i++) {
-                matrix[i+offset] = matrix_debouncing[i+offset];
-            }
-            debouncing = false;
-        }
-#   endif
-
-    return 1;
-}
-
-#ifdef USE_I2C
-
-// Get rows from other half over i2c
-int i2c_transaction(void) {
-    int slaveOffset = (isLeftHand) ? (ROWS_PER_HAND) : 0;
-
-    int err = i2c_master_start(SLAVE_I2C_ADDRESS + I2C_WRITE);
-    if (err) goto i2c_error;
-
-    // start of matrix stored at 0x00
-    err = i2c_master_write(0x00);
-    if (err) goto i2c_error;
-
-    // Start read
-    err = i2c_master_start(SLAVE_I2C_ADDRESS + I2C_READ);
-    if (err) goto i2c_error;
-
-    if (!err) {
-        int i;
-        for (i = 0; i < ROWS_PER_HAND-1; ++i) {
-            matrix[slaveOffset+i] = i2c_master_read(I2C_ACK);
-        }
-        matrix[slaveOffset+i] = i2c_master_read(I2C_NACK);
-        i2c_master_stop();
-    } else {
-i2c_error: // the cable is disconnceted, or something else went wrong
-        i2c_reset_state();
-        return err;
-    }
-
-    return 0;
-}
-
-#else // USE_SERIAL
-
-int serial_transaction(void) {
-    int slaveOffset = (isLeftHand) ? (ROWS_PER_HAND) : 0;
-
-    if (serial_update_buffers()) {
-        return 1;
-    }
-
-    for (int i = 0; i < ROWS_PER_HAND; ++i) {
-        matrix[slaveOffset+i] = serial_slave_buffer[i];
-    }
-    return 0;
-}
-#endif
-
-uint8_t matrix_scan(void)
-{
-    uint8_t ret = _matrix_scan();
-
-#ifdef USE_I2C
-    if( i2c_transaction() ) {
-#else // USE_SERIAL
-    if( serial_transaction() ) {
-#endif
-        // turn on the indicator led when halves are disconnected
-        TXLED1;
-
-        error_count++;
-
-        if (error_count > ERROR_DISCONNECT_COUNT) {
-            // reset other half if disconnected
-            int slaveOffset = (isLeftHand) ? (ROWS_PER_HAND) : 0;
-            for (int i = 0; i < ROWS_PER_HAND; ++i) {
-                matrix[slaveOffset+i] = 0;
-            }
-        }
-    } else {
-        // turn off the indicator led on no error
-        TXLED0;
-        error_count = 0;
-    }
-    matrix_scan_quantum();
-    return ret;
-}
-
-void matrix_slave_scan(void) {
-    _matrix_scan();
-
-    int offset = (isLeftHand) ? 0 : ROWS_PER_HAND;
-
-#ifdef USE_I2C
-    for (int i = 0; i < ROWS_PER_HAND; ++i) {
-        i2c_slave_buffer[i] = matrix[offset+i];
-    }
-#else // USE_SERIAL
-    for (int i = 0; i < ROWS_PER_HAND; ++i) {
-        serial_slave_buffer[i] = matrix[offset+i];
-    }
-#endif
-}
-
-bool matrix_is_modified(void)
-{
-    if (debouncing) return false;
-    return true;
-}
-
-inline
-bool matrix_is_on(uint8_t row, uint8_t col)
-{
-    return (matrix[row] & ((matrix_row_t)1<<col));
-}
-
-inline
-matrix_row_t matrix_get_row(uint8_t row)
-{
-    return matrix[row];
-}
-
-void matrix_print(void)
-{
-    print("\nr/c 0123456789ABCDEF\n");
-    for (uint8_t row = 0; row < MATRIX_ROWS; row++) {
-        phex(row); print(": ");
-        pbin_reverse16(matrix_get_row(row));
-        print("\n");
-    }
-}
-
-uint8_t matrix_key_count(void)
-{
-    uint8_t count = 0;
-    for (uint8_t i = 0; i < MATRIX_ROWS; i++) {
-        count += bitpop16(matrix[i]);
-    }
-    return count;
-}
-
-#if (DIODE_DIRECTION == COL2ROW)
-
-static void init_cols(void)
-{
-    for(uint8_t x = 0; x < MATRIX_COLS; x++) {
-        uint8_t pin = col_pins[x];
-        _SFR_IO8((pin >> 4) + 1) &= ~_BV(pin & 0xF); // IN
-        _SFR_IO8((pin >> 4) + 2) |=  _BV(pin & 0xF); // HI
-    }
-}
-
-static bool read_cols_on_row(matrix_row_t current_matrix[], uint8_t current_row)
-{
-    // Store last value of row prior to reading
-    matrix_row_t last_row_value = current_matrix[current_row];
-
-    // Clear data in matrix row
-    current_matrix[current_row] = 0;
-
-    // Select row and wait for row selecton to stabilize
-    select_row(current_row);
-    wait_us(30);
-
-    // For each col...
-    for(uint8_t col_index = 0; col_index < MATRIX_COLS; col_index++) {
-
-        // Select the col pin to read (active low)
-        uint8_t pin = col_pins[col_index];
-        uint8_t pin_state = (_SFR_IO8(pin >> 4) & _BV(pin & 0xF));
-
-        // Populate the matrix row with the state of the col pin
-        current_matrix[current_row] |=  pin_state ? 0 : (ROW_SHIFTER << col_index);
-    }
-
-    // Unselect row
-    unselect_row(current_row);
-
-    return (last_row_value != current_matrix[current_row]);
-}
-
-static void select_row(uint8_t row)
-{
-    uint8_t pin = row_pins[row];
-    _SFR_IO8((pin >> 4) + 1) |=  _BV(pin & 0xF); // OUT
-    _SFR_IO8((pin >> 4) + 2) &= ~_BV(pin & 0xF); // LOW
-}
-
-static void unselect_row(uint8_t row)
-{
-    uint8_t pin = row_pins[row];
-    _SFR_IO8((pin >> 4) + 1) &= ~_BV(pin & 0xF); // IN
-    _SFR_IO8((pin >> 4) + 2) |=  _BV(pin & 0xF); // HI
-}
-
-static void unselect_rows(void)
-{
-    for(uint8_t x = 0; x < ROWS_PER_HAND; x++) {
-        uint8_t pin = row_pins[x];
-        _SFR_IO8((pin >> 4) + 1) &= ~_BV(pin & 0xF); // IN
-        _SFR_IO8((pin >> 4) + 2) |=  _BV(pin & 0xF); // HI
-    }
-}
-
-#elif (DIODE_DIRECTION == ROW2COL)
-
-static void init_rows(void)
-{
-    for(uint8_t x = 0; x < ROWS_PER_HAND; x++) {
-        uint8_t pin = row_pins[x];
-        _SFR_IO8((pin >> 4) + 1) &= ~_BV(pin & 0xF); // IN
-        _SFR_IO8((pin >> 4) + 2) |=  _BV(pin & 0xF); // HI
-    }
-}
-
-static bool read_rows_on_col(matrix_row_t current_matrix[], uint8_t current_col)
-{
-    bool matrix_changed = false;
-
-    // Select col and wait for col selecton to stabilize
-    select_col(current_col);
-    wait_us(30);
-
-    // For each row...
-    for(uint8_t row_index = 0; row_index < ROWS_PER_HAND; row_index++)
-    {
-
-        // Store last value of row prior to reading
-        matrix_row_t last_row_value = current_matrix[row_index];
-
-        // Check row pin state
-        if ((_SFR_IO8(row_pins[row_index] >> 4) & _BV(row_pins[row_index] & 0xF)) == 0)
-        {
-            // Pin LO, set col bit
-            current_matrix[row_index] |= (ROW_SHIFTER << current_col);
-        }
-        else
-        {
-            // Pin HI, clear col bit
-            current_matrix[row_index] &= ~(ROW_SHIFTER << current_col);
-        }
-
-        // Determine if the matrix changed state
-        if ((last_row_value != current_matrix[row_index]) && !(matrix_changed))
-        {
-            matrix_changed = true;
-        }
-    }
-
-    // Unselect col
-    unselect_col(current_col);
-
-    return matrix_changed;
-}
-
-static void select_col(uint8_t col)
-{
-    uint8_t pin = col_pins[col];
-    _SFR_IO8((pin >> 4) + 1) |=  _BV(pin & 0xF); // OUT
-    _SFR_IO8((pin >> 4) + 2) &= ~_BV(pin & 0xF); // LOW
-}
-
-static void unselect_col(uint8_t col)
-{
-    uint8_t pin = col_pins[col];
-    _SFR_IO8((pin >> 4) + 1) &= ~_BV(pin & 0xF); // IN
-    _SFR_IO8((pin >> 4) + 2) |=  _BV(pin & 0xF); // HI
-}
-
-static void unselect_cols(void)
-{
-    for(uint8_t x = 0; x < MATRIX_COLS; x++) {
-        uint8_t pin = col_pins[x];
-        _SFR_IO8((pin >> 4) + 1) &= ~_BV(pin & 0xF); // IN
-        _SFR_IO8((pin >> 4) + 2) |=  _BV(pin & 0xF); // HI
-    }
-}
-
-#endif
diff --git a/keyboards/lily58/rev1/matrix.c b/keyboards/lily58/rev1/matrix.c
index 718cc5744..eaff974e5 100755
--- a/keyboards/lily58/rev1/matrix.c
+++ b/keyboards/lily58/rev1/matrix.c
@@ -95,9 +95,8 @@ uint8_t matrix_cols(void)
 
 void matrix_init(void)
 {
-    debug_enable = true;
-    debug_matrix = true;
-    debug_mouse = true;
+    split_keyboard_setup();
+
     // initialize row and col
     unselect_rows();
     init_cols();
diff --git a/keyboards/lily58/rev1/split_util.c b/keyboards/lily58/rev1/split_util.c
index e1ff8b437..316c1c389 100755
--- a/keyboards/lily58/rev1/split_util.c
+++ b/keyboards/lily58/rev1/split_util.c
@@ -7,6 +7,7 @@
 #include "split_util.h"
 #include "matrix.h"
 #include "keyboard.h"
+#include "wait.h"
 
 #ifdef USE_MATRIX_I2C
 #  include "i2c.h"
@@ -14,19 +15,59 @@
 #  include "split_scomm.h"
 #endif
 
+#ifndef SPLIT_USB_TIMEOUT
+#    define SPLIT_USB_TIMEOUT 2500
+#endif
+
 volatile bool isLeftHand = true;
 
-static void setup_handedness(void) {
-  #ifdef EE_HANDS
-    isLeftHand = eeprom_read_byte(EECONFIG_HANDEDNESS);
-  #else
-    // I2C_MASTER_RIGHT is deprecated, use MASTER_RIGHT instead, since this works for both serial and i2c
-    #if defined(I2C_MASTER_RIGHT) || defined(MASTER_RIGHT)
-      isLeftHand = !has_usb();
-    #else
-      isLeftHand = has_usb();
-    #endif
-  #endif
+bool waitForUsb(void) {
+    for (uint8_t i = 0; i < (SPLIT_USB_TIMEOUT / 100); i++) {
+        // This will return true of a USB connection has been established
+        if (UDADDR & _BV(ADDEN)) {
+            return true;
+        }
+        wait_ms(100);
+    }
+
+    // Avoid NO_USB_STARTUP_CHECK - Disable USB as the previous checks seem to enable it somehow
+    (USBCON &= ~(_BV(USBE) | _BV(OTGPADE)));
+
+    return false;
+}
+
+__attribute__((weak)) bool is_keyboard_left(void) {
+#if defined(SPLIT_HAND_PIN)
+    // Test pin SPLIT_HAND_PIN for High/Low, if low it's right hand
+    setPinInput(SPLIT_HAND_PIN);
+    return readPin(SPLIT_HAND_PIN);
+#elif defined(EE_HANDS)
+    return eeconfig_read_handedness();
+#elif defined(MASTER_RIGHT)
+    return !has_usb();
+#endif
+
+    return has_usb();
+}
+
+__attribute__((weak)) bool has_usb(void) {
+    static enum { UNKNOWN, MASTER, SLAVE } usbstate = UNKNOWN;
+
+    // only check once, as this is called often
+    if (usbstate == UNKNOWN) {
+#if defined(SPLIT_USB_DETECT)
+        usbstate = waitForUsb() ? MASTER : SLAVE;
+#elif defined(__AVR__)
+        USBCON |= (1 << OTGPADE);  // enables VBUS pad
+        wait_us(5);
+
+        usbstate = (USBSTA & (1 << VBUS)) ? MASTER : SLAVE;  // checks state of VBUS
+#else
+        usbstate = MASTER;
+#endif
+    }
+
+    return (usbstate == MASTER);
 }
 
 static void keyboard_master_setup(void) {
@@ -47,14 +88,8 @@ static void keyboard_slave_setup(void) {
 #endif
 }
 
-bool has_usb(void) {
-   USBCON |= (1 << OTGPADE); //enables VBUS pad
-   _delay_us(5);
-   return (USBSTA & (1<<VBUS));  //checks state of VBUS
-}
-
 void split_keyboard_setup(void) {
-   setup_handedness();
+   isLeftHand = is_keyboard_left();
 
    if (has_usb()) {
       keyboard_master_setup();
@@ -63,8 +98,3 @@ void split_keyboard_setup(void) {
    }
    sei();
 }
-
-// this code runs before the usb and keyboard is initialized
-void matrix_setup(void) {
-    split_keyboard_setup();
-}
diff --git a/keyboards/lily58/split_util.c b/keyboards/lily58/split_util.c
deleted file mode 100644
index 49b065518..000000000
--- a/keyboards/lily58/split_util.c
+++ /dev/null
@@ -1,83 +0,0 @@
-#include <avr/io.h>
-#include <avr/wdt.h>
-#include <avr/power.h>
-#include <avr/interrupt.h>
-#include <util/delay.h>
-#include <avr/eeprom.h>
-#include "split_util.h"
-#include "matrix.h"
-#include "keyboard.h"
-#include "config.h"
-#include "timer.h"
-
-#ifdef USE_I2C
-#  include "i2c.h"
-#else
-#  include "serial.h"
-#endif
-
-volatile bool isLeftHand = true;
-
-static void setup_handedness(void) {
-  #ifdef EE_HANDS
-    isLeftHand = eeprom_read_byte(EECONFIG_HANDEDNESS);
-  #else
-    // I2C_MASTER_RIGHT is deprecated, use MASTER_RIGHT instead, since this works for both serial and i2c
-    #if defined(I2C_MASTER_RIGHT) || defined(MASTER_RIGHT)
-      isLeftHand = !has_usb();
-    #else
-      isLeftHand = has_usb();
-    #endif
-  #endif
-}
-
-static void keyboard_master_setup(void) {
-#ifdef USE_I2C
-    i2c_master_init();
-#else
-    serial_master_init();
-#endif
-}
-
-static void keyboard_slave_setup(void) {
-  timer_init();
-#ifdef USE_I2C
-    i2c_slave_init(SLAVE_I2C_ADDRESS);
-#else
-    serial_slave_init();
-#endif
-}
-
-bool has_usb(void) {
-   USBCON |= (1 << OTGPADE); //enables VBUS pad
-   _delay_us(5);
-   return (USBSTA & (1<<VBUS));  //checks state of VBUS
-}
-
-void split_keyboard_setup(void) {
-   setup_handedness();
-
-   if (has_usb()) {
-      keyboard_master_setup();
-   } else {
-      keyboard_slave_setup();
-   }
-   sei();
-}
-
-void keyboard_slave_loop(void) {
-   matrix_init();
-
-   while (1) {
-      matrix_slave_scan();
-   }
-}
-
-// this code runs before the usb and keyboard is initialized
-void matrix_setup(void) {
-    split_keyboard_setup();
-
-    if (!has_usb()) {
-        keyboard_slave_loop();
-    }
-}
diff --git a/keyboards/lily58/split_util.h b/keyboards/lily58/split_util.h
deleted file mode 100644
index 595a0659e..000000000
--- a/keyboards/lily58/split_util.h
+++ /dev/null
@@ -1,20 +0,0 @@
-#ifndef SPLIT_KEYBOARD_UTIL_H
-#define SPLIT_KEYBOARD_UTIL_H
-
-#include <stdbool.h>
-#include "eeconfig.h"
-
-#define SLAVE_I2C_ADDRESS           0x32
-
-extern volatile bool isLeftHand;
-
-// slave version of matix scan, defined in matrix.c
-void matrix_slave_scan(void);
-
-void split_keyboard_setup(void);
-bool has_usb(void);
-void keyboard_slave_loop(void);
-
-void matrix_master_OLED_init (void);
-
-#endif