gnu: Add r-yapsa.

* gnu/packages/bioconductor.scm (r-yapsa): New variable.
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Ricardo Wurmus 2019-03-29 20:28:46 +01:00
parent 28098414d0
commit 303f2ed1c6
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@ -3722,3 +3722,43 @@ variants} (SNVs). It provides a infrastructure related to the methodology
described in Nik-Zainal (2012, Cell), with flexibility in the matrix
decomposition algorithms.")
(license license:expat)))
(define-public r-yapsa
(package
(name "r-yapsa")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "YAPSA" version))
(sha256
(base32
"1agacimdd1m5yja2xbcsb83mns4svpxbjcsfrvm9ydqdj737i10j"))))
(properties `((upstream-name . "YAPSA")))
(build-system r-build-system)
(propagated-inputs
`(("r-circlize" ,r-circlize)
("r-complexheatmap" ,r-complexheatmap)
("r-corrplot" ,r-corrplot)
("r-dendextend" ,r-dendextend)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-getoptlong" ,r-getoptlong)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-gtrellis" ,r-gtrellis)
("r-keggrest" ,r-keggrest)
("r-lsei" ,r-lsei)
("r-pmcmr" ,r-pmcmr)
("r-reshape2" ,r-reshape2)
("r-somaticsignatures" ,r-somaticsignatures)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/YAPSA/")
(synopsis "Yet another package for signature analysis")
(description
"This package provides functions and routines useful in the analysis of
somatic signatures (cf. L. Alexandrov et al., Nature 2013). In particular,
functions to perform a signature analysis with known signatures and a
signature analysis on @dfn{stratified mutational catalogue} (SMC) are
provided.")
(license license:gpl3)))