Commit Graph

338 Commits

Author SHA1 Message Date
Pierre Neidhardt ac1ee30f4f
gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
  javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
  javascript module instead of lisp.
2019-12-05 13:48:47 +01:00
Tobias Geerinckx-Rice fabd4900d8
build-system/linux-module: Accept a #:make-flags keyword.
Fixes bug#37882.

* guix/build-system/linux-module.scm (linux-module-build): Accept a
MAKE-FLAGS argument.
<builder>: Pass it on.
2019-12-04 11:25:33 +02:00
Hartmut Goebel b6d852ce6d
guix: Add the 'qt' build system.
* guix/build-system/qt.scm, guix/build/qt-build-system.scm: New files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Buiild systems): Add the new build system.
2019-12-01 20:24:47 +01:00
Mathieu Othacehe 154d97abdd
Merge remote-tracking branch master into core-updates 2019-11-16 09:34:27 +01:00
Mathieu Othacehe 534537e2ef
gnu: cmake: Fix cross-compilation.
* gnu/packages/cmake.scm (cmake-minimal-cross): New package.
* guix/build-system/cmake.scm (default-cmake): Add new target argument and use
it to select cmake-minimal or cmake-minimal-cross.
(lower): Pass target to default-cmake.
2019-11-15 17:32:25 +01:00
Guillaume Le Vaillant 5cace974a4
build-system/asdf: Fix package transform.
* guix/build-system/asdf.scm (package-with-build-system):
  [find-input-package]: New function.
  [rewrite]: Use it.
2019-10-18 11:09:44 +02:00
Ludovic Courtès f618134e4c
build-system/gnu: 'package-with-explicit-inputs' uses 'package-mapping'.
* guix/build-system/gnu.scm (package-with-explicit-inputs): Rename to...
(package-with-explicit-inputs/deprecated): ... this.
(package-with-explicit-inputs*): New procedure.
(package-with-explicit-inputs): Define as a 'case-lambda*'.
2019-10-14 00:08:10 +02:00
Carl Dong e214a22007
gnu: Add nsis-x86_64 and nsis-i686.
* guix/build-system/scons.scm (scons-build): Add build-targets and
install-targets parameters.
* guix/build/scons-build-system.scm (build, install): Adjust
accordingly.
* doc/guix.texi (Build Systems): Document it.
* gnu/packages/installers.scm: New file,
(make-nsis): New procedure,
(nsis-x86_64, nsis-i686): New variables.
* gnu/packages/patches/nsis-env-passthru.patch: New file.
* gnu/local.mk (dist_patch_DATA, GNU_SYSTEM_MODULES): Adjust
accordingly.
2019-10-11 11:44:44 -04:00
Mark H Weaver 65542a8852
Merge branch 'master' into core-updates 2019-09-06 20:46:00 -04:00
Marius Bakke 56b1977a5d
build-system/julia: Avoid module cycles.
* guix/build-system/julia.scm: Remove unused imports.
(lower)[julia]: Default to (DEFAULT-JULIA).
2019-09-05 00:20:41 +02:00
Ricardo Wurmus 458b07ebe0
build-system/julia: Fix syntax error.
* guix/build-system/julia.scm: Fix invalid module reference.
2019-09-04 23:56:24 +02:00
nixo a44a535ebe
build: Add julia-build-system.
* guix/build/julia-build-system.scm: New file.
* guix/build-system/julia.scm: New file.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document julia-build-system.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-09-04 22:17:38 +02:00
Ludovic Courtès 2791870d09
import: crate: Separate crates.io API from actual conversion.
This provides a clean separation between bindings to the
https://crates.io/api/v1 API and actual conversion to Guix package
sexps.

As a side-effect, it fixes things like "guix import blake2-rfc", "guix
refresh -t crates", etc.

* guix/import/crate.scm (<crate>, <crate-version>, <crate-dependency>):
New record types.
(lookup-crate, crate-version-dependencies): New procedures.
(crate-fetch): Remove.
(crate->guix-package): Rewrite to use the new API.
(latest-release): Likewise.
* guix/build-system/cargo.scm (%crate-base-url): New variable.
* tests/crate.scm (test-crate): Update accordingly.

fixlet
2019-09-04 13:02:27 +02:00
Mark H Weaver 893c2df00d
Merge branch 'master' into core-updates 2019-08-22 15:53:27 -04:00
Ricardo Wurmus c586f427b4
build-system/r: bioconductor-uri: Take optional package type.
* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to
return annotation or experiment URLs.
2019-08-16 15:07:22 +02:00
Marius Bakke 462ad9f56b
Merge branch 'master' into core-updates 2019-08-13 20:42:06 +02:00
Ricardo Wurmus 2541379ee4
build-system/texlive: Add texlive-origin.
* guix/build-system/texlive.scm (texlive-origin): New procedure.
2019-07-23 21:43:24 +02:00
Ludovic Courtès 64de896a71
Merge branch 'master' into core-updates 2019-07-17 15:51:10 +02:00
Robert Vollmert 4fde0030d4
build/cargo-build-system: Use bundled json instead of guile-json.
* guix/build/cargo-build-system.scm: Use (gnu build json) instead
of (json parser).
* guix/build-system/cargo.scm: Import (gnu build json) instead of
(json parser).

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-16 09:54:12 +02:00
Julien Lepiller a4bb189210
Revert "guix: node-build-system: Use guile-json instead of a custom parser."
The effect of this change was to import the (json parser) from the host
side into the build side. The solution here would be to do the equivalent
of ‘with-extensions’ for gexps. Since we don't use gexps for build
systems just yet, revert this for now.

This reverts commit 8eb0ba532e.
2019-07-14 20:18:07 +02:00
Julien Lepiller 8eb0ba532e
guix: node-build-system: Use guile-json instead of a custom parser.
* guix/build/json.scm: Remove file.
* Makefile.am: Remove it.
* guix/build/node-build-system.scm: Use (json parser) instead of (guix build json).
* guix/build-system/node.scm: Idem.
2019-07-14 14:57:46 +02:00
Jelle Licht 09a1f92f61
build: Add node-build-system.
* guix/build/node-build-system.scm: New file.
* guix/build-system/node.scm: New file.
* guix/build/json.scm: New file.
* doc/guix.texi: Document it.
* Makefile.am: Added new files.

Co-Authored-By: Julien Lepiller <julien@lepiller.eu>
2019-07-14 12:20:48 +02:00
Marius Bakke c43b090326
build-system/meson: Enable compiler optimizations.
* guix/build-system/meson.scm (meson-build)[#:build-type]: Set to 'debugoptimized'.
2019-07-07 19:14:04 +02:00
Marius Bakke 4fb9165515
Merge branch 'staging' into core-updates 2019-07-02 20:18:16 +02:00
Maxim Cournoyer a537620054
import: pypi: Update the host URI.
* guix/build-system/python.scm (pypi-uri): Update the host URI to
"files.pythonhosted.org".
2019-07-02 10:08:00 +09:00
Ludovic Courtès d9bbfe042e
Merge branch 'master' into core-updates 2019-06-13 13:24:35 +02:00
Ivan Petkov d608e231e3
build-system/cargo: Don't copy source as an output.
* guix/build-system/cargo.scm: (cargo-build)[build-expression->derivation]:
Don't add "src" output.
* guix/build/cargo-build-system.scm: (install-source): Delete it.
(%standard-phases): Delete 'install-source.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11 18:05:44 -07:00
Ivan Petkov a6ab6b7877
build-system/cargo: Expand transitive crate sources.
* guix/build/cargo: (package-cargo-inputs): Add it.
(package-cargo-development-inputs): Add it.
(crate-closure): Add it.
(expand-crate-sources): Add it.
(lower)[private-keywords]: Add #:cargo-inputs and
[bag]: Use expand-crate-sources to augment build-inputs.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-06-11 18:05:41 -07:00
Ludovic Courtès 30eb738366
build-system/guile: Add #:not-compiled-file-regexp.
* guix/build/guile-build-system.scm (build): Add
 #:not-compiled-file-regexp and honor it.
* guix/build-system/guile.scm (guile-build): Likewise.
(guile-cross-build): Likewise.
2019-06-02 22:01:34 +02:00
Marius Bakke 57df83e07d
Merge branch 'staging' into core-updates 2019-05-25 00:25:15 +02:00
Ricardo Wurmus 6490cd31cc
guix: Update to Bioconductor 3.9.
* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.9.
2019-05-06 00:14:27 +02:00
Marius Bakke 3b458d5462
Merge branch 'master' into core-updates 2019-05-01 23:11:41 +02:00
Julien Lepiller c3634df2a4
gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent
packages.

This fixes <https://bugs.gnu.org/27462>.

* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
2019-04-25 19:01:31 +02:00
Danny Milosavljevic 88e13c2587
build-system/linux-module: Support module source versioning.
* guix/build-system/linux-module.scm (make-linux-module-builder)
[native-inputs]: Add linux.
[arguments]<#:phases>[install]: Install "System.map" and "Module.symvers".
* guix/build/linux-module-build-system.scm (configure): Delete procedure.
(%standard-phases): Delete "configure" phase.
2019-04-12 00:13:34 +02:00
Danny Milosavljevic ce6312999f
Add (guix build-system linux-module).
* guix/build/linux-module-build-system.scm: New file.
* guix/build-system/linux-module.scm: New file.
* doc/guix.texi (Build Systems): Document it.
* Makefile.am (MODULES): Add them.
2019-04-11 17:50:18 +02:00
Ivan Petkov 1d3acde508
build-system/cargo: refactor phases to successfully build
* guix/build-system/cargo.scm (%cargo-build-system-modules):
Add (json parser).
(cargo-build):
[vendor-dir]: Define flag and pass it to builder code.
[cargo-test-flags]: Likewise.
[skip-build?]: Likewise.
* guix/build/cargo-build/system.scm (#:use-module): use (json parser).
(package-name->crate-name): Delete it.
(manifest-targets): Add it.
(has-executable-target?): Add it.
(configure): Add #:vendor-dir name and use it.
Don't touch Cargo.toml.
Don't symlink to duplicate inputs.
Remove useless registry line from cargo config.
Define RUSTFLAGS to lift lint restrictions.
(build): Add #:skip-build? flag and use it.
(check): Likewise.
Add #:cargo-test-flags and pass it to cargo.
(install): Factor source logic to install-source.
Define #:skip-build? flag and use it.
Only install if executable targets are present.
(install-source): Copy entire crate directory not just src.
[generate-checksums] pass dummy file for unused second argument.
(%standard-phases): Add install-source phase.

Signed-off-by: Chris Marusich <cmmarusich@gmail.com>
2019-04-09 03:09:00 -07:00
Marius Bakke 8c14f7f8a7
Merge branch 'staging' into core-updates 2019-03-23 23:16:55 +01:00
Julien Lepiller 78b3748c1c
guix: dune-build-system: Add a package parameter.
* guix/build-system/dune.scm: Add a package parameter.
* guix/build/dune.scm (build, test, install): Use it.
* doc/guix.texi: Document it.
2019-03-23 22:58:52 +01:00
Efraim Flashner 4e4c311465
build: Add rakudo-build-system.
* guix/build-system/rakudo.scm,
guix/build/rakudo-build-system.scm: New files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build System): Document it.
2019-03-23 22:26:48 +02:00
Marius Bakke ad4910eec0
build-system/meson: Add #:allowed-references and #:disallowed-references.
* guix/build-system/meson.scm (meson-build): Add support for
  #:allowed-references and #:disallowed-references.
2019-03-21 19:23:47 +01:00
Maxim Cournoyer 2f33a7321e
cmake: Generate documentation.
To prevent complicating the dependencies of a core tool, a new variant,
CMAKE-MINIMAL is introduced and the CMake build system is configured to use it
by default.  The regular CMAKE package gains a manpage, info manual as well
as HTML documentation.

Fixes issue #33497 (https://bugs.gnu.org/33497).

* gnu/packages/cmake.scm (gnu): Use modules (gnu packages python-xyz),
(gnu packages texinfo) and (srfi srfi-1).
(cmake-minimal): Rename the original cmake variable to this.
[phases]{configure}: Extract the configure script arguments to...
[configure-flags]: here.
[properties]: Set the HIDDEN? property to #t.
(cmake): New variable, which inherits from CMAKE-MINIMAL.
[phases]{move-html-doc}: Add phase.
[native-inputs]: Add PYTHON-SPHINX and TEXINFO.
[outputs]: Add the "doc" output.
[properties]: Clear the inherited HIDDEN? property.
* guix/build-system/cmake.scm (default-cmake): Use CMAKE-MINIMAL instead of
CMAKE.
2019-03-20 21:38:19 -04:00
Ludovic Courtès ee71d44e60
build-system/glib-or-gtk: Support #:disallowed-references.
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Add
 #:disallowed-references and honor it.
2019-03-15 23:27:58 +01:00
Leo Famulari e3900a4d64
build-system/go: Build with a filesystem union of Go dependencies.
This basically changes (guix build-system go) so that instead of looking
up its dependencies in a list of directories in $GOPATH, all the
Go dependencies are symlinked into a single directory.

Fixes <https://bugs.gnu.org/33620>.

* guix/build/go-build-system.scm (setup-go-environment): New variable.
(setup-environment, install-source): Remove variables.
(unpack): Unpack the source relative to $GOPATH.
(install): Do not install the compiled objects in the 'pkg' directory.
Install the source code in this phase, and only install the source of
the package named by IMPORT-PATH.
* doc/guix.texi (Build Systems): Adjust accordingly.
* gnu/packages/docker.scm (docker): Import (guix build union) on the build side
and adjust to build phase name changes in (guix build-system go).
* gnu/packages/shellutils.scm (direnv): Likewise.
* gnu/packages/databases.scm (mongo-tools)[arguments]:
Set '#:install-source #f'.
* gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts'
phase after the 'install' phase.
2019-03-14 15:34:26 -04:00
Ivan Petkov 7d141788b1
gnu: rust: Factor out "cargo-utils" from "cargo-build-system".
* guix/build/cargo-utils.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/build-system/cargo.scm (%cargo-utils-modules): New variable.
(%cargo-build-system-modules): Use it.
* guix/build/cargo-build-system.scm (file-sha256, generate-checksums): Move
from here...
* guix/build/cargo-utils.scm: ...to here.
* gnu/packages/rust.scm (rust-1.19.0)[arguments]<#:imported-modules>: Use
%cargo-utils-modules.
<#:phases>[patch-cargo-checksums]: Use (guix build cargo-utils).
* gnu/packages/gnuzilla.scm (icecat):
[arguments]<#:imported-modules>: Use %cargo-utils-modules.
<#phases>[patch-cargo-checksums]: import (guix build cargo-utils).

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-03-01 08:20:50 +01:00
Ricardo Wurmus b96909c5c1
guix: scons: Fix module reference.
* guix/build-system/scons.scm (default-scons): Find "scons" package in
(gnu packages python-xyz) instead of (gnu packages python).
2019-01-15 18:15:07 +01:00
Ricardo Wurmus d4d9a1ece0
gnu: Update texlive packages.
* guix/build-system/texlive.scm (%texlive-tag, %texlive-revision): Update to
texlive-2018.2, revision 49435.
* gnu/packages/tex.scm (texlive-dvips, texlive-generic-unicode-data,
texlive-generic-dehyph-exptl, texlive-generic-hyph-utf8, texlive-fontname,
texlive-fonts-cm, texlive-tex-plain, texlive-latex-base,
texlive-latex-graphics, texlive-latex-graphics, texlive-latex-oberdiek,
texlive-latex-tools, texlive-latex-l3kernel, texlive-latex-l3packages,
texlive-latex-fontspec, texlive-latex-amsmath, texlive-latex-amscls,
texlive-latex-babel, texlive-latex-cyrillic, texlive-latex-eqparbox,
texlive-latex-ifplatform, texlive-latex-etoolbox, texlive-latex-galois,
texlive-latex-polyglossia, texlive-tex-texinfo, texlive-latex-changebar,
texlive-latex-fancyhdr, texlive-latex-overpic, texlive-latex-parskip,
texlive-metapost, texlive-latex-ucs, texlive-generic-pdftex,
texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base): Update
hashes.
(texlive-latex-fontspec)[arguments]: Remove custom build target.
(texlive-latex-dinbrief)[arguments]: Add build phase "fix-encoding-error".
(texlive-latex-xkeyval): New variable.
(texlive-latex-pstool)[source]: Fetch from new location.
[build-system]: Use trivial-build-system.
[arguments]: Write simple builder.
[propagated-inputs]: Add texlive-latex-l3kernel, texlive-latex-tools, and
texlive-latex-xkeyval.
[synopsis]: Fix typo.
2019-01-10 22:43:09 +01:00
Ludovic Courtès 804b9b18ac
build-system/asdf: 'package-with-build-system' accesses inputs lazily.
Fixes a bug whereby we would, at the top-level (while evaluation
lisp.scm package definitions), attempt to access package inputs.
Because of circular dependencies, this could lead to unbound variables
as reported by Arun Isaac <arunisaac@systemreboot.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=33801#56>.

* guix/build-system/asdf.scm (package-with-build-system)[transform]
(new-propagated-inputs): Turn into a procedure.
Adjust user accordingly.
2019-01-09 15:01:40 +01:00
Julien Lepiller 6e8986c838
build: Add dune-build-system.
* guix/build/dune-build-system.scm,
  guix/build-system/dune.scm: New files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document dune-build-system.
* guix/build-system/ocaml.scm (lower, default-findlib, default-ocaml): Export
them.
(package-with-explicit-ocaml): Also transform packages built with
dune-build-system.
2018-12-18 22:16:23 +01:00
Marius Bakke 4820b75de0
Merge branch 'master' into core-updates 2018-11-24 19:44:05 +01:00
Jelle Licht 3fe6fcc45f
build-system: clojure-build-system: Fix %default-clojure location.
* guix/build-system/clojure.scm (%default-clojure): Use new package path.
2018-11-24 16:25:55 +01:00
Marius Bakke 4f70db97a0
Merge branch 'master' into core-updates 2018-11-20 01:14:12 +01:00
Alex Vong df730f6757
build-system: Add 'clojure-build-system'.
* guix/build-system/clojure.scm, guix/build/clojure-build-system.scm: New
files.
* guix/build/clojure-utils.scm (@*, @@*): New macros.
(%source-dirs, %test-dirs, %compile-dir, %main-class, %omit-source?,
%aot-include, %aot-exclude, %tests?, %test-include, %test-exclude,
%clojure-regex): New variables.
(package-name->jar-names, canonicalize-relative-path, find-files*,
file-sans-extension, relative-path->clojure-lib-string, find-clojure-libs,
compiled-from?, include-list\exclude-list, eval-with-clojure, create-jar):
New procedures.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document 'clojure-build-system'.
2018-11-19 12:07:44 +01:00
Julien Lepiller 564cf93f2a
gnu: ocaml: Update to 4.7.0.
Update ocaml to the latest version and fixes dependent packages by
updating them or by adding new inputs, such as ocaml-num and ocamlbuild,
that were removed from the core ocaml package. Rename packages that
cannot be built with the new compiler with an ocaml4.02 prefix. Add
ocaml4.02 dependencies.

* gnu/packages/ocaml.scm (ocaml): Update to 4.7.0.
(ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip)
(ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest)
(ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree)
(ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned)
(ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult)
(ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner)
(ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools)
(ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log)
(ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos)
(ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf)
(ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake)
(ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq)
(ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages.
(opam): Update to 2.0.0.
(camlp4): Update to 4.07+1.
(camlp5): Update to 7.06.
(hevea): Update to 2.32.
(coq)[inputs]: Add ocaml-num.
(emacs-tuareg): Update to 2.2.0.
(ocaml-menhir)[native-inputs]: Add ocamlbuild.
(ocaml-lablgtk): Update to 2.18.6.
(unison)[inputs]: Use ocaml-4.02.
(ocaml-findlib): Update to 1.8.0.
(ocaml-ounit)[native-inputs]: Add ocamlbuild.
(ocamlmod): Update to 0.0.9.
(ocaml-frontc)[arguments]: Use ocaml-4.02.
(ocaml-qcheck)[native-inputs]: Add ocamlbuild.
(ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild.
(ocaml-stringext)[native-inputs]: Add ocamlbuild.
(ocaml-bisect): Update to 1.3.1.
(ocaml4.01-bisect): Downgrade to 1.3.
(ocaml-bitstring): Update to 3.1.0.
(ocaml-topkg)[native-inputs]: Add ocamlbuild.
(ocaml-rresult)[native-inputs]: Add ocamlbuild.
(ocaml-sqlite3)[native-inputs]: Add ocamlbuild.
(ocaml-csv)[native-inputs]: Add ocamlbuild.
(ocaml-mtime)[native-inputs]: Add ocamlbuild.
(ocaml-cmdliner)[native-inputs]: Add ocamlbuild.
(ocaml-fmt)[native-inputs]: Add ocamlbuild.
(ocaml-astring)[native-inputs]: Add ocamlbuild.
(ocaml-alcotest)[native-inputs]: Add ocamlbuild.
(ocaml-ppx-tools)[native-inputs]: Add ocamlbuild.
(ocaml-react)[native-inputs]: Add ocamlbuild.
(ocaml-ssl)[arguments]: Return #t in phases.
(ocaml-lwt): Update to 4.1.0.
(ocaml-logs)[native-inputs]: Add ocamlbuild.
(ocaml-fpath)[native-inputs]: Add ocamlbuild.
(ocaml-bos)[native-inputs]: Add ocamlbuild.
(ocaml-xmlm): Update to 1.3.0.
(ocaml-ulex): Update to 1.2.0.
(ocaml-uchar)[native-inputs]: Add ocamlbuild.
(ocaml-uutf): Update to 1.0.1.
(ocaml-jsonm): Update to 1.0.1.
(ocaml-ocurl): Update to 0.8.2.
(ocaml-base64)[native-inputs]: Add ocamlbuild.
(ocamlify)[native-inputs]: Use ocaml-4.02.
(omake): Update to 0.10.3.
(ocaml-batteries): Update to 2.9.0.
(ocaml-pcre)[native-inputs]: Add ocamlbuild.
(ocaml-expect): Update 0.0.6.
(ocaml4.02-fileutils): Update to 0.5.3.
(ocaml-oasis): Update 0.4.11.
(ocaml-js-build-tools)[native-inputs]: Add ocamlbuild.
(ocaml-bin-prot): Rename to ocaml4.02-bin-prot.
(ocaml-fieldslib): Rename to ocaml4.02-fieldslib.
(ocaml-ppx-core): Rename to ocaml4.02-ppx-core.
(ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp.
(ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver.
(ocaml-cppo): Update to 1.6.5.
(ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving.
(ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv.
(ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test.
(ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench.
(ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare.
(ocaml-sexplib): Rename to ocaml4.02-sexplib.
(ocaml-typerep): Rename to ocaml4.02-typerep.
(ocaml-variantslib): Rename to ocaml4.02-variantslib.
(ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv.
(ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv.
(ocaml-ppx-here): Rename to ocaml4.02-ppx-here.
(ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert.
(ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate.
(ocaml-ppx-let): Rename to ocaml4.02-ppx-let.
(ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv.
(ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value.
(ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang.
(ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot.
(ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail.
(ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf.
(ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message.
(ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv.
(ocaml-re): Update to 1.8.0.
(ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect.
(ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane.
(ocaml-core-kernel): Rename to ocaml4.02-core-kernel.
(ocaml-async-kernel): Rename to ocaml4.02-async-kernel.
(ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel.
(ocaml-core): Rename to ocaml4.02-core.
(ocaml-async-unix): Rename to ocaml4.02-async-unix.
(ocaml-async-extra): Rename to ocaml4.02-async-extra.
(ocaml-async): Rename to ocaml4.02-async.
(ocaml-ocplib-endian)[native-inputs]: Update to 1.0.
(ocaml-cstruct): Rename to ocaml4.02-cstruct.
(ocaml-hex): Rename to ocaml4.02-hex.
(ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm.
(ocaml-uri): Rename to ocaml4.02-uri.
(optcomp): Use ocaml-4.02.
(ocaml-piqilib): Update to 0.6.14.
(ocaml-uuidm)[native-inputs]: Add ocamlbuild.
(ocaml-graph): Update to 1.8.8.
(ocaml-piqi): Update to 0.7.6.
(bap): Update to 1.3.0.
(ocaml-camomile): Update to 1.0.1.
(ocaml-jbuilder): Use ocaml-4.02.
(ocaml-lambda-term): Update to 1.13.
(ocaml-utop): Update to 2.2.0.
(ocaml-integers)[native-inputs]: Add ocamlbuild.
(ocaml-ctypes): Update to 0.14.0.
(ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild.
(ocaml-tsdl)[native-inputs]: Add ocamlbuild.
* gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02.
* gnu/packages/maths.scm (cubicle): Update to 1.1.2.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
Update patch.
* guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib)
(package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
2018-11-18 18:51:08 +01:00
Marius Bakke 55174e668f
Merge branch 'master' into core-updates 2018-11-07 21:09:57 +01:00
Ricardo Wurmus 9da4848632
guix: Update to Bioconductor 3.8.
* guix/import/cran.scm (%bioconductor-version): Update to 3.8.
* guix/build-system/r.scm (bioconductor-uri): Update archive URL.
2018-11-06 18:21:24 +01:00
Marius Bakke ffddb42d6c
Merge branch 'master' into core-updates 2018-10-21 18:06:02 +02:00
Leo Famulari 7277d06d8b
gnu: Use pypi.org.
<pypi.io> redirects to <pypi.org>.

* guix/build-system/python.scm (pypi-uri): Replace pypi.io with pypi.org.
* guix/import/pypi.scm (pypi-url?): Likewise.
* tests/pypi.scm: Likewise.
2018-10-18 23:46:33 -04:00
Leo Famulari e8bd1946ec
Merge branch 'master' into core-updates 2018-10-07 20:49:14 -04:00
Leo Famulari 68afb9dccf
build-system/glib-or-gtk: Build 'in-source' by default.
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Change to
'out-of-source? #f'.
* gnu/packages/audio.scm (audacity)[arguments]: Use the default 'out-of-source?'
setting.
* gnu/packages/libreoffice.scm (libreoffice): Likewise.
2018-10-07 16:13:51 -04:00
Marius Bakke cf6db76d2a
Merge branch 'master' into core-updates 2018-10-05 19:15:39 +02:00
Timothy Sample bb6419f374
build-system: haskell: Add #:cabal-revision argument.
Add a #:cabal-revision argument for specifying which Cabal file revision
from Hackage should be used.

* guix/build-system/haskell.scm (source-url->revision-url): New function.
(lower): Accept a cabal-revision keyword argument, convert it to an
origin record, and add it to the resulting bag's host-inputs.
(haskell-build): Pass the cabal-revision input to the builder as an
argument.
* guix/build/haskell-build-system.scm (patch-cabal-file): New phase.
(%standard-phases): Add it.
2018-10-01 12:12:08 +02:00
Leo Famulari d763940711
Merge branch 'master' into core-updates 2018-09-13 13:32:39 -04:00
Leo Famulari 875d068176
Adjust all users of (gnu packages ldc) to use (gnu packages dlang).
This is a followup to commit 98d6543f86.

* gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust
accordingly.
2018-09-10 15:44:32 -04:00
Marius Bakke 839167ff9d
Merge branch 'staging' into core-updates 2018-08-25 16:44:07 +02:00
Marius Bakke bf91e6835d
build-system/meson: Strip RUNPATH and remove PatchELF traces.
* guix/build-system/meson.scm (%meson-build-system-modules): Don't
import (guix build rpath).
* guix/build/meson-build-system.scm (fix-runpath): Rename to ...
(shrink-runpath): ... this.  Update docstring.  Remove AUGMENT-RPATH calls and
related code.
(%standard-phases): Add 'shrink-runpath'.
2018-08-22 18:01:09 +02:00
Pierre Neidhardt dece8c91a9
build-system/asdf: Fix typo in "dependency".
* guix/build-system/asdf.scm (default-lisp): Fix typo in "dependency".
2018-08-21 16:27:03 +02:00
Marius Bakke 1af575f04d
Merge branch 'master' into staging 2018-07-28 18:34:59 +02:00
Marius Bakke 94eb59fb4a
build-system/meson: Remove RUNPATH workarounds.
* guix/build-system/meson.scm (default-patchelf): Remove.
(lower)[build-inputs]: Remove PATCHELF.
(meson-build): Don't delete 'fix-runpath' phase on armhf.
* guix/build/meson-build-system.scm (configure): Add "--c_link_args" and
  "-cpp_link_args" instead of setting LDFLAGS.
(meson-build): Don't apply 'fix-runpath' phase.
2018-07-28 14:54:18 +02:00
Ludovic Courtès 2a3b1b3235
build-system: Add 'guile-build-system'.
* guix/build-system/guile.scm, guix/build/guile-build-system.scm: New
files.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document 'guile-build-system'.
2018-07-23 12:25:31 +02:00
Marius Bakke cb4b508cd6
build-system/meson: Really skip the 'fix-runpath' phase on armhf.
This follows up commit d5b5a15a40 which doesn't
work because %current-system etc expands before the actual build.

Fixes <https://bugs.gnu.org/31719>.

* guix/build-system/meson.scm (meson-build)[builder]: Compare against the
already existing "system" variable rather than (%current-system).
2018-07-02 12:07:58 +02:00
Ricardo Wurmus 32eb44240d
build-system/r: Accept #:r argument.
* guix/build-system/r.scm (lower): Add #:r to private-keywords.
2018-06-18 13:51:28 +02:00
Ricardo Wurmus 0ebef06dbe
build-system/r: Update to Bioconductor 3.7.
This is a follow-up to 41f17554d8.

* guix/build-system/r.scm (bioconductor-uri): Update to version 3.7.
2018-06-05 09:58:52 +02:00
Danny Milosavljevic b87fc9ab9d
gnu: android-make-stub: Update to 0.6.0.
* gnu/packages/android.scm (android-make-stub): Update to 0.6.0.
* guix/build-system/android-ndk.scm (android-ndk-build): Modify.
(lower): Modify.
2018-05-10 15:35:28 +02:00
Danny Milosavljevic c6ee92c41b
gnu: Add android-googletest.
* gnu/packages/android.scm (android-googletest): New variable.
* guix/build-system/android-ndk.scm (android-ndk-build): Use it.
2018-05-10 02:12:03 +02:00
Danny Milosavljevic 9ed36cd3d6
build-system: android-ndk: Support unit tests.
* guix/build-system/android-ndk.scm (android-ndk-build): Add googletest.
* guix/build/android-ndk-build-system.scm (check): Check whether tests are
enabled.  Run root-level tests as well.
2018-05-10 01:06:22 +02:00
Danny Milosavljevic 436515cdb8
build: Add the Android NDK build-system.
* guix/build-system/android-ndk.scm: New file.
* guix/build/android-ndk-build-system.scm: New file.
* Makefile.am: Add them.
2018-05-09 19:16:04 +02:00
Maxim Cournoyer facc0a96a1
build-system: emacs: Add improved check phase.
* guix/build-system/emacs.scm (emacs-build): Add #:test-command keyword
argument. Remove #:configure-flags and #:test-target keyword arguments.
* guix/build/emacs-build-system.scm (check): New procedure.
(%standard-phases): Register check phase after the build phase.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2018-04-20 00:49:53 +05:30
Nikolai Merinov f342bb58fe
gnu: rust: Update rust to 1.24.1.
* gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1.
Reorganize bootstrap binaries to match new "rust" package structure with two
ouputs "out" with Rust compiler and "cargo" with Cargo package manager.
Replace all "system*" by "invoke".
(rust-1.23): Rename "rustc" to "rust".  Update sha256 for tarball.  Add cargo
related dependencies.  Install "cargo" as separate "rust" output.  Remove
substitutes for parts that were fixed in "rustc" source code.  Install
documentation to separate "doc" output.  Update configuration according to
changes in "rustc" source code.  Replace all "system*" by "invoke".
(rust): Create package for 1.24.1 rust release based on rust-1.23 release.
* guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and
"default-rustc" functions with "default-rust" function.
(cargo-build-system): Take only one package as "rust" source.  Use "rustc" of
default output of "rust" package, use "cargo" as "cargo" output of "rust"
package.
2018-03-30 15:46:53 +02:00
Marius Bakke 061f204dcd
Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."
This requires adding (guix utils) to the build inputs, and causes too many
rebuilds for now.

This reverts commit 24a2e9172a.
2018-03-20 00:06:50 +01:00
Efraim Flashner 24a2e9172a
build-system/meson: Use 'target-arm32?' for armhf-linux case.
* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux
detection with 'target-arm32?' macro.
2018-03-19 22:07:37 +02:00
Marius Bakke 7ace97395f
Merge branch 'master' into staging 2018-03-18 01:09:25 +01:00
Marius Bakke d5b5a15a40
build-system/meson: Skip the 'fix-runpath' phase on armhf.
* guix/build-system/meson.scm (lower): Remove DEFAULT-PATCHELF from inputs
on armhf.
(meson-build): Ignore the 'fix-runpath' phase when building for arm systems.
2018-03-12 17:27:07 +01:00
Ricardo Wurmus ad1d03fcf0
build-system: minify: Do not import (ice-9 popen) in the build environment.
The (ice-9 popen) module should not be added to the imported-modules here,
because that depends on the Guile that is used on the host side.

* guix/build-system/minify.scm (%minify-build-system-modules): Remove import
of (ice-9 popen).
2018-03-12 15:14:01 +01:00
Ludovic Courtès 297602513b
build-system/trivial: Add support for #:allowed-references.
* guix/build-system/trivial.scm (lower): Add #:allowed-references and
keep it in the 'arguments' field.
(trivial-build): Add #:allowed-references.  Add
'canonicalize-reference'.  Pass #:allowed-references to
'build-expression->derivation'.
(trivial-cross-build): Likewise.
* tests/packages.scm ("trivial with #:allowed-references"): New test.
2018-02-28 22:47:42 +01:00
Mark H Weaver efe2a2833c
Merge branch 'master' into core-updates 2018-02-09 01:46:34 -05:00
Maxim Cournoyer 58b6812fd4
emacs-build-system: Reinstate the check phase.
* guix/build/emacs-build-system.scm (%standard-phases): Reinstate the check
phase from the gnu-build-system.
* guix/build-system/emacs.scm (emacs-build)[tests?]: But do not enable it by default.
[parallel-tests?]: Add argument.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-05 16:54:27 +01:00
Danny Milosavljevic d1a08062c6
build-system/glib-or-gtk: Don't generate 'icon-theme.cache'.
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build): Don't generate
'icon-theme.cache'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-01 18:09:05 +01:00
Ludovic Courtès d2b5ede053
build-system/gnu: Check whether the cross-libc has a "static" output.
This is a followup to 614fffe427, which
broke cross-compilation to i686-w64-mingw32.

* guix/build-system/gnu.scm (standard-cross-packages): Add
"cross-libc:static" only when LIBC has a "static" output.
2017-12-21 10:46:24 +01:00
Ludovic Courtès 614fffe427
build-system/gnu: Add the "static" output of libc in cross environments.
Fixes a regression whereby the host libc.a would be missing when
cross-compiling.

This is a followup to commit 6dff905e51.

* guix/build-system/gnu.scm (standard-cross-packages): Add the
"cross-libc:static".
2017-12-20 14:56:47 +01:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Ludovic Courtès 8bc1935c7c
build-system/asdf: Use 'mlambda'.
* guix/build-system/asdf.scm (package-with-build-system): Use 'mlambda'
instead of 'memoize'.
2017-12-10 23:44:58 +01:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Arun Isaac 3d0aa7f70b
build-system: Add scons-build-system.
* guix/build-system/scons.scm: New file.
* guix/build/scons-build-system.scm: New file.
* Makefile.am (MODULES): Register them.
* doc/guix.texi (Build Systems): Add scons-build-system.
2017-11-30 18:19:31 +05:30
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Leo Famulari d8e257113c
build-system/go: Don't let Go executables refer to the Go compiler.
* guix/build/go-build-system.scm (remove-store-reference, remove-go-references):
New procedures.
(%standard-phases): Add 'remove-go-references' phase.
* guix/build-system/go.scm (go-build): Add allow-go-reference? key.
2017-11-17 18:25:20 -05:00
Ludovic Courtès a864d56302
build-system/gnu: Add 'install-license-files' phase.
Suggested by Dave Love <fx@gnu.org>.

* guix/build-system/gnu.scm (%license-file-regexp): New variable.
(gnu-build): Add #:license-file-regexp and use it.
(gnu-cross-build): Likewise.
* guix/build/gnu-build-system.scm (%license-file-regexp): New variable.
(install-license-files): New procedure.
(%standard-phases): Add it.
2017-11-08 22:43:56 +01:00
Ricardo Wurmus 25e51b1c45
guix: Add archive support for bioconductor-uri.
* guix/build-system/r.scm (bioconductor-uri): Also return the archive URL.
* guix/import/cran.scm (latest-bioconductor-release, fetch-description):
Adjust because bioconductor-uri now returns a list.
2017-11-07 08:14:09 +01:00
Leo Famulari c10851cf91
build-system/go: Parameterize installing the source code.
* guix/build-system/go.scm (go-build): Add install-source? key.
* guix/build/go-build-system.scm (install-source): Check if
install-source? is true.
2017-10-24 13:10:34 -04:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Leo Famulari 91525b486c
build: Add the Go build system.
* guix/build-system/go.scm,
guix/build/go-build-system.scm: New files.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document the go-build-system.
2017-10-12 21:22:40 -04:00