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Ludovic Courtès
82e64fc14e environment: Correctly handle abnormal exits. 
Fixes <http://bugs.gnu.org/21958>.

* guix/scripts/environment.scm (status->exit-code): New procedure.
(exit/status, primitive-exit/status): Use it.
* tests/guix-environment-container.sh: Add test.
 2015-11-21 22:26:13 +01:00
Ludovic Courtès
6493fd0458 tests: Skip 'guix-container-environment.sh' when support is missing. 
Fixes <http://bugs.gnu.org/21410>.
Reported by Alex Vong <alexvong1995@gmail.com>.

* tests/guix-environment-container.sh: Exit with 77 when
'((@@ (guix scripts environment) assert-container-features))' fails.
 2015-11-21 22:26:13 +01:00
Ludovic Courtès
aabe6d3801 doc: Remove extraneous "See." 
* doc/contributing.texi (Building from Git): Remove extra "See" and use
@xref instead of @pxref.
 2015-11-21 22:26:13 +01:00
Efraim Flashner
92d9a36e97 gnu: tig: Update to 2.1.1. 
* gnu/packages/version-control.scm (tig): Update to 2.1.1.
 2015-11-21 23:03:11 +02:00
Efraim Flashner
7fbbd3e7a0 gnu: cvs: Use external zlib. 
* gnu/packages/version-control.scm (cvs)[arguments]: add configure flag
  --with-exernal-zlib.
 2015-11-21 21:43:11 +02:00
Efraim Flashner
f94f481988 gnu: nano: Update to 2.4.3. 
* gnu/packages/nano.scm (nano): Update to 2.4.3.
 2015-11-21 20:56:08 +02:00
Ludovic Courtès
a51cbecb44 refresh: Rewrite '--list-dependent' in terms of (guix graph). 
* guix/scripts/refresh.scm (all-packages, list-dependents): New
procedures.
(guix-refresh): Use it.
 2015-11-21 16:27:34 +01:00
Ludovic Courtès
923d846c4d graph: Add procedures to query a node's edges. 
* guix/graph.scm (%node-edges, node-edges, node-back-edges)
(node-transitive-edges): New procedures.
* tests/graph.scm ("node-edges")
("node-transitive-edges + node-back-edges"): New tests.
 2015-11-21 16:26:43 +01:00
Ludovic Courtès
8fb583714f Add (guix graph). 
* guix/scripts/graph.scm (<node-type>, <graph-backend>, emit-prologue)
(emit-epilogue, emit-node, emit-edge, %graphviz-backend, export-graph):
Move to...
* guix/graph.scm: ... here.  New file.
* guix/scripts/system.scm, tests/graph.scm: Use it.
* Makefile.am (MODULES): Add it.
 2015-11-21 16:26:43 +01:00
Mathieu Lirzin
1b933e62dc gnu: parted: Update to 3.2. 
* gnu/packages/disk.scm (parted): Update to 3.2.
[inputs]: Add lvm2 and remove check.  Replace readline-6.2 with its
latest version.
[native-inputs]: Add perl and python for the tests.
[arguments]: Use `modify-phases' and adapt to the new tests.
[home-page]: Use https.
 2015-11-21 13:10:27 +01:00
Ludovic Courtès
06da1a6b4f gnu: Add qemu-minimal. 
* gnu/packages/qemu.scm (qemu): Exchange with former QEMU-HEADLESS.
(qemu-headless): Rename to...
(qemu-minimal): ... this.  New variable.  Pass --target-list.
* gnu/packages/debug.scm (qemu-2.3.0): Inherit from QEMU-MINIMAL.
* gnu/packages/grub.scm (qemu-for-tests): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm, qemu-image):
Update to name change.
 2015-11-21 00:36:23 +01:00
Alex Kost
bb38ece458 doc: Fix 'geiser-guile-load-path' example. 
Reported by marusich on #guix.

* doc/contributing.texi (The Perfect Setup): Wrap modifying
  'geiser-guile-load-path' into 'with-eval-after-load'.
 2015-11-21 02:19:04 +03:00
Ricardo Wurmus
56215e4154 gnu: Add Synfig Studio. 
* gnu/packages/animation.scm (synfigstudio): New variable.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus
7775a18690 gnu: Add Synfig. 
* gnu/packages/animation.scm (synfig): New variable.
* gnu/packages/patches/synfig-build-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus
c1fbc66a77 gnu: Add ETL. 
* gnu/packages/animation.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus
307ad140db gnu: Add MLT. 
* gnu/packages/video.scm (mlt): New variable.
 2015-11-20 20:23:03 +01:00
Ricardo Wurmus
561965941c gnu: Add libxml++. 
* gnu/packages/gnome.scm (libxml++): New variable.
 2015-11-20 20:23:03 +01:00
Eric Bavier
9cf5245497 gnu: slepc: Update to 3.6.2. 
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
  [arguments]: Append "/lib" to arpack configure flag.  Use 'inputs'
  rather than '%build-inputs' in 'configure phase.
 2015-11-20 11:58:40 -06:00
Eric Bavier
32187d99bb gnu: petsc: Update to 3.6.2. 
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
 2015-11-20 11:58:40 -06:00
Eric Bavier
c69fa4380a gnu: mumps: Update to 5.0.1. 
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
 2015-11-20 11:58:40 -06:00
Eric Bavier
ac356fd6ab gnu: openmpi: Update to 1.10.1. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.1.
  [arguments]: Remove now-unsupported configure flags.  Add
  --enable-builtin-atomics.  Remove development-oriented
  --enable-debug.
 2015-11-20 11:58:40 -06:00
Eric Bavier
2f5b6a1f18 gnu: hwloc: Update to 1.11.1. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
  [source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 11:58:40 -06:00
Ricardo Wurmus
0297966495 gnu: guitarix: Update to 0.34.0. 
* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
 2015-11-20 18:19:30 +01:00
David Thompson
a907d9973a gnu: services: Fix typo in gpm-dmd-service. 
* gnu/services/base.scm (gpm-dmd-service): s/dmd/gpm/
 2015-11-20 09:56:41 -05:00
David Thompson
3307c7877e gnu: Add emulation-station. 
* gnu/packages/games.scm (emulation-station): New variable.
 2015-11-20 09:27:15 -05:00
Ricardo Wurmus
b49c5a58dc gnu: preseq: Update to 2.0. 
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
  file.
* gnu-system.am (dist_patch_DATA): Remove them.
 2015-11-20 15:22:06 +01:00
Ricardo Wurmus
c6a24d6e92 gnu: Add smithlab-cpp. 
* gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
 2015-11-20 15:22:06 +01:00
Ricardo Wurmus
3d51ec919e gnu: edirect: Update home page. 
* gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing
  slash to home page.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
c52a382c4a gnu: sra-tools: Update to 2.5.4. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
9e5ef614aa gnu: ncbi-vdb: Update to 2.5.4. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
614a8977cb gnu: ngs-java: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
d6a1cd7cae gnu: ngs-sdk: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
2c84ba7e11 gnu: Add ruby-net-ssh. 
* gnu/packages/ruby.scm (ruby-net-ssh): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
4f2a52aeb5 gnu: Add ruby-mocha. 
* gnu/packages/ruby.scm (ruby-mocha): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
d93062fd5c gnu: Add ruby-redcarpet. 
* gnu/packages/ruby.scm (ruby-redcarpet): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
97aee8d3eb gnu: Add ruby-introspection. 
* gnu/packages/ruby.scm (ruby-introspection): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
4016ba3fd0 gnu: Add ruby-instantiator. 
* gnu/packages/ruby.scm (ruby-instantiator): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
21f7b7bd80 gnu: Add ruby-blankslate. 
* gnu/packages/ruby.scm (ruby-blankslate): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
25d6d49b3e gnu: Add ruby-metaclass. 
* gnu/packages/ruby.scm (ruby-metaclass): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
3383f5bdab gnu: Add ruby-test-unit. 
* gnu/packages/ruby.scm (ruby-test-unit): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
cc5aeb8c7d gnu: Add ruby-packnga. 
* gnu/packages/ruby.scm (ruby-packnga): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
c1f52261e2 gnu: Add ruby-gettext. 
* gnu/packages/ruby.scm (ruby-gettext): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
e2333ea391 gnu: Add ruby-text. 
* gnu/packages/ruby.scm (ruby-text): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
347eb21e1d gnu: Add ruby-locale. 
* gnu/packages/ruby.scm (ruby-locale): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
f88bacaf6f gnu: Add ruby-power-assert. 
* gnu/packages/ruby.scm (ruby-power-assert): New variable.
 2015-11-20 15:21:24 +01:00
Ricardo Wurmus
9641a89957 gnu: bless: Build only for x86_64. 
* gnu/packages/bioinformatics.scm (bless): Add supported-systems field.
 2015-11-20 11:32:32 +01:00
Ricardo Wurmus
0536727efe gnu: htseq: Propagate numpy. 
* gnu/packages/bioinformatics.scm (htseq)[inputs]: Move python2-numpy
  from here ...
[propagated-inputs]: ... to here.
 2015-11-20 11:32:32 +01:00
Ricardo Wurmus
dffdef0f0f gnu: ant: Update to 1.9.6. 
* gnu/packages/java.scm (ant): Update to 1.9.6.
 2015-11-20 11:32:32 +01:00
Ludovic Courtès
b2a72238b9 gnu: guix: Update development snapshot to 5c36edc. 
* gnu/packages/package-management.scm (guix-devel): Update to 5c36edc.
 2015-11-19 22:33:01 +01:00
Ludovic Courtès
5c36edc818 doc: Mention fonts for Asian languages. 
Suggested by Alex Vong <alexvong1995@gmail.com>.

* doc/guix.texi (Application Setup): Explain how to install X11 fonts
  for Asian languages.
 2015-11-19 17:39:48 +01:00