Commit Graph

50939 Commits

Author SHA1 Message Date
Ludovic Courtès f5698dfb87
tests: Avoid unnecessary use of 'mock'.
* tests/build-utils.scm ("wrap-script, simple case"): Use the real
'which' instead of mocking it.
2019-11-26 00:16:35 +01:00
Ludovic Courtès 1d64afbdc0
tests: Avoid (catch 'srfi-34 …) form.
* tests/build-utils.scm ("wrap-script, raises condition"): Use 'guard'
instead of "catch 'srfi-34".
2019-11-26 00:16:35 +01:00
Mark H Weaver 5d297ca676
gnu: linux-libre: Update to 5.3.13.
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.13.
(linux-libre-5.3-pristine-source): Update hash.
2019-11-25 12:08:12 -05:00
Mark H Weaver 6c693a6e3f
gnu: linux-libre@4.19: Update to 4.19.86.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.86.
(linux-libre-4.19-pristine-source): Update hash.
2019-11-25 12:08:09 -05:00
Mark H Weaver 79832fb285
gnu: linux-libre@4.14: Update to 4.14.156.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.156.
(linux-libre-4.14-pristine-source): Update hash.
2019-11-25 12:08:02 -05:00
Alex Griffin 377606238f
gnu: Add netcat-openbsd.
* gnu/packages/admin.scm (netcat-openbsd): New variable.
2019-11-25 09:43:38 -06:00
Ricardo Wurmus dae3458cd2
gnu: r-rrcov: Update to 1.4-9.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-9.
2019-11-25 15:25:10 +01:00
Ricardo Wurmus 166995af92
gnu: r-future: Update to 1.15.1.
* gnu/packages/cran.scm (r-future): Update to 1.15.1.
2019-11-25 15:25:10 +01:00
Ricardo Wurmus 0ee5e9fb75
gnu: r-epi: Update to 2.40.
* gnu/packages/cran.scm (r-epi): Update to 2.40.
2019-11-25 15:25:10 +01:00
Ricardo Wurmus b674f87a46
gnu: r-vioplot: Update to 0.3.3.
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.3.
2019-11-25 15:25:10 +01:00
Jan Nieuwenhuizen 2baed64291
gnu: mes: Update to 0.21.
* gnu/packages/mes.scm (mes): Update to 0.21.
2019-11-25 14:33:27 +01:00
Ricardo Wurmus b5d4d5b9bc
gnu: guile-gi: Update to 0.2.1.
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.2.1.
[arguments]: Add phase to start Xorg server for tests.
[native-inputs]: Add xorg-server.
2019-11-25 14:05:39 +01:00
Ricardo Wurmus ea2884c12c
gnu: Add bsequencer.
* gnu/packages/music.scm (bsequencer): New variable.
2019-11-25 14:05:39 +01:00
Ricardo Wurmus 19600e0810
gnu: r-bookdown: Update to 0.16.
* gnu/packages/cran.scm (r-bookdown): Update to 0.16.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 401cc85e61
gnu: r-protviz: Update to 0.5.1.
* gnu/packages/cran.scm (r-protviz): Update to 0.5.1.
[inputs]: Remove perl and python-2.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 138fbdf354
gnu: r-rnifti: Update to 1.0.0.
* gnu/packages/cran.scm (r-rnifti): Update to 1.0.0.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 2eff036278
gnu: r-tidytree: Update to 0.3.0.
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.0.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 3356eb511c
gnu: r-sjplot: Update to 2.8.0.
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.0.
[propagated-inputs]: Remove r-broom and r-nlme; add r-effectsize and
r-parameters.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 10faf81097
gnu: r-tidyverse: Update to 1.3.0.
* gnu/packages/cran.scm (r-tidyverse): Update to 1.3.0.
[propagated-inputs]: Add r-pillar.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus eb6aad884f
gnu: r-parameters: Update to 0.3.0.
* gnu/packages/cran.scm (r-parameters): Update to 0.3.0.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus a6828e0bf5
gnu: r-abn: Update to 2.2.
* gnu/packages/cran.scm (r-abn): Update to 2.2.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus f94705d606
gnu: r-limsolve: Update to 1.5.6.
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.6.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 3b2c3878f5
gnu: r-prodlim: Update to 2019.11.13.
* gnu/packages/cran.scm (r-prodlim): Update to 2019.11.13.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 3d391d2df4
gnu: r-webshot: Update to 0.5.2.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.2.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 2cef54c060
gnu: r-insight: Update to 0.7.0.
* gnu/packages/cran.scm (r-insight): Update to 0.7.0.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 24edd279e4
gnu: Add r-effectsize.
* gnu/packages/cran.scm (r-effectsize): New variable.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 7b4b1136cc
gnu: r-rcppeigen: Update to 0.3.3.7.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.7.0.
2019-11-25 14:05:38 +01:00
Ricardo Wurmus 55bb00b198
gnu: r-rlang: Update to 0.4.2.
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.2.
2019-11-25 14:05:37 +01:00
Ricardo Wurmus 0dc62774e1
gnu: r-digest: Update to 0.6.23.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.23.
2019-11-25 14:05:37 +01:00
Ricardo Wurmus 5b720c15d1
gnu: r-pheatmap: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-pheatmap): Move from here...
* gnu/packages/cran.scm (r-pheatmap): ...to here.
2019-11-25 14:05:37 +01:00
Ricardo Wurmus 54a8cb963d
gnu: r-scales: Update to 1.1.0.
* gnu/packages/cran.scm (r-scales): Update to 1.1.0.
[propagated-inputs]: Remove r-rcpp; add r-farver and r-lifecycle.
2019-11-25 14:05:37 +01:00
Ricardo Wurmus 46130b7bee
gnu: r-scales: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-scales): Move variable from here...
* gnu/packages/cran.scm (r-scales): ...to here.
2019-11-25 14:05:32 +01:00
Efraim Flashner aca2bf51b7
gnu: sdsl-lite: Don't use bundled libraries.
* gnu/packages/datastructures.scm (sdsl-lite)[source]: Remove bundled
libraries in a snippet. Add patch to link to external libraries.
[arguments]: Add phase to install static library.
[native-inputs]: Add libdivsufsort.
2019-11-25 14:08:32 +02:00
Efraim Flashner 2b04bb3b4e
gnu: sdsl-lite: Remove unused inputs.
Documentation also wants graphviz, which drastically increases
'guiz size sdsl-lite'.

* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Remove
doxygen.
2019-11-25 14:08:32 +02:00
Efraim Flashner 3546771cc8
gnu: libdivsufsort: Move to datastructures.scm.
* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
2019-11-25 14:08:32 +02:00
Efraim Flashner 31872b3e75
gnu: Add boost-static.
* gnu/packages/boost.scm (boost-static): New variable.
2019-11-25 14:08:31 +02:00
Efraim Flashner 775373b872
gnu: coq-bignums: Don't use unstable tarball.
* gnu/pacakges/coq.scm (coq-bignums)[source]: Download using git-fetch.
2019-11-25 14:08:31 +02:00
Efraim Flashner 8b1fd3cafd
gnu: bioperl-minimal: Don't use unstable tarball.
* gnu/packages/bioinformatics.scm (bioperl-minimal)[source]: Download
using git-fetch.
2019-11-25 14:08:31 +02:00
Efraim Flashner 46b0136e09
gnu: innoextract: Update to 1.8.
* gnu/packages/compression.scm (innoextract): Update to 1.8.
2019-11-25 14:08:31 +02:00
Efraim Flashner ff9838640c
gnu: innoextract: Don't use unstable tarball.
* gnu/packages/compression.scm (innoextract)[source]: Download the
release tarball.
2019-11-25 14:08:31 +02:00
Efraim Flashner 298180cdb2
gnu: unshield: Don't use unstable tarball.
* gnu/packages/compression.scm (unshield)[source]: Download using
git-fetch.
2019-11-25 14:08:30 +02:00
Efraim Flashner 898ac8e732
gnu: snappy: Don't use unstable tarball.
* gnu/packages/compression.scm (snappy)[source]: Download using
git-fetch.
2019-11-25 14:08:30 +02:00
Efraim Flashner d40362f425
gnu: sfarklib: Don't use unstable tarball.
* gnu/packages/compression.scm (sfarklib)[source]: Download using
git-fetch.
2019-11-25 14:08:30 +02:00
Efraim Flashner 609ba8d116
gnu: cinnamon-desktop: Don't use unstable tarball.
* gnu/packages/cinnamon.scm (cinnamon-desktop)[source]: Download using
git-fetch.
2019-11-25 14:08:30 +02:00
Efraim Flashner fea30e12f7
gnu: sparsehash: Don't use unstable tarball.
* gnu/packages/datastructures.scm (sparsehash)[source]: Download using
git-fetch.
2019-11-25 14:08:30 +02:00
Efraim Flashner e56d02a0e0
gnu: imlib2: Sort inputs alphabetically.
* gnu/packages/image.scm (imlib2)[inputs]: Sort alphabetically.
2019-11-25 14:08:29 +02:00
Efraim Flashner 115ace6ba5
gnu: imlib2: Update to 1.6.0.
* gnu/packages/image.scm (imlib2): Update to 1.6.0.
[inputs]: Add libwebp, libid3tag.
2019-11-25 14:08:29 +02:00
Efraim Flashner 2f6500faa4
gnu: gnunet-gtk: Sort inputs alphabetically.
* gnu/packages/gnunet.scm (gnunet-gtk)[inputs]: Sort alphabetically.
2019-11-25 14:08:29 +02:00
Efraim Flashner dbdd77074a
gnu: gnunet-gtk: Update to 0.11.7.
* gnu/packages/gnunet.scm (gnunet-gtk): Update to 0.11.7.
[version]: Don't inherit version from gnutls.
[inputs]: Add gnutls/dane.
2019-11-25 14:08:29 +02:00
Efraim Flashner edce19938a
gnu: gnunet: Update to 0.11.8.
* gnu/packages/gnunet.scm: Update to 0.11.8.
[inputs]: Add libidn2, miniupnpc, zbar. Remove glib, gmp,
gst-plugins-base, libidn, nss, openssl, perl, python-2.
[native-inputs]: Add python, xxd, which.
[arguments]: Remove configure-flags. Add phase to remove network
dependent tests. Re-arrange location of new 'check phase.
2019-11-25 14:08:29 +02:00